8.6.96 - Released: 2025-11-05 - Content: 284158 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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Details about selected cell
NeuroMorpho.Org ID :  NMO_04586
Cell Name :  2004-02-16-B-L23dendax
Archive Name :  Helmstaedter
Species Name :  rat
Strain :  Wistar
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites Complete, Axon Moderate
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  20.0 days
Max Age :  29.0 days
Gender :  Not reported
Min Weight :  Not reported
Max Weight :  Not reported
Development :  young
Primary Brain Region :  neocortex
Secondary Brain Region :  somatosensory
Tertiary Brain Region :  layer 2-3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Neurolucida.asc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  biocytin
Slicing Direction :  thalamocortical
Slice Thickness :  350  μm
Tissue Shrinkage :  Reported (no values given)
Not corrected
Objective Type :  oil
Magnification :  100x
Reconstruction Method :  Neurolucida
Date of Deposition :  2008-10-17
Date of Upload :  2009-03-25
Persistence Vector :  2004-02-16-B-L23dendax.pvec
Note :  When originally released, this reconstruction had been incompletely processed, and this issue was fixed in release 6.1 (May 2015). The pre-6.1 version of the processed file is available for download here.

Reference Article
Related Article Reference :  The relation between dendritic geometry, electrical excitability, and axonal projections of L2/3 Interneurons in rat barrel cortex.

Measurements
Soma Surface :  942.97 μm2
Number of Stems :  8
Number of Bifurcations :  173
Number of Branches :  354
Overall Width :  716.45 μm
Overall Height :  791.29 μm
Overall Depth :  684.67 μm
Average Diameter :  0.69 μm
Total Length :  22714.4 μm
Total Surface :  46214.2 μm2
Total Volume :  17356.6 μm3
Max Euclidean Distance :  947.35 μm
Max Path Distance :  1964.71 μm
Max Branch Order :  23
Average Contraction :  0.86
Total Fragmentation :  4933
Partition Asymmetry :  0.52
Average Rall's Ratio :  1.71
Average Bifurcation Angle Local :  82.42°
Average Bifurcation Angle Remote :  71.09°
Fractal Dimension :  1.05

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