8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
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Log File (Original)



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NeuroMorpho.Org ID :  NMO_165534
Cell Name :  18867_3758-x14594-y6944
Archive Name :  BICCN-MOp-miniatlas-anatomy
Species Name :  mouse
Strain :  Pvalb-T2A-CreERT2;Ai166
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites & Axon Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  56.0 days
Max Age :  56.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  frontal
Tertiary Brain Region :  primary motor, layer 5
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Extratelencephalic (ET), complex, tufted
Original Format :  Vaa3D.swc
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  enhanced green fluorescent protein
Slicing Direction :  whole mount
Slice Thickness :  Not applicable
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  40x
Reconstruction Method :  Vaa3D
Date of Deposition :  2020-04-03
Date of Upload :  2021-10-06
Persistence Vector :  18867_3758-x14594-y6944.pvec
Note :  This reconstruction was obtained from the Allen Institute for Brain Science, and it is registered to the Common Coordinate Framework (CCF).

Reference Article
Related Article Reference :  Cellular Anatomy of the Mouse Primary Motor Cortex

Measurements
Soma Surface :  116.02 μm2
Number of Stems :  10
Number of Bifurcations :  215
Number of Branches :  440
Overall Width :  7030.55 μm
Overall Height :  12409.3 μm
Overall Depth :  4291.23 μm
Average Diameter :  2 μm
Total Length :  90879 μm
Total Surface :  571010 μm2
Total Volume :  285505 μm3
Max Euclidean Distance :  11323.5 μm
Max Path Distance :  16342.4 μm
Max Branch Order :  26
Average Contraction :  0.93
Total Fragmentation :  5399
Partition Asymmetry :  0.62
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  75.38°
Average Bifurcation Angle Remote :  65.08°
Fractal Dimension :  1.02

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