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Morphology File (Standardized)
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Log File (Original)



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NeuroMorpho.Org ID :  NMO_165517
Cell Name :  18453_2713-x27713-y9899
Archive Name :  BICCN-MOp-miniatlas-anatomy
Species Name :  mouse
Strain :  Cux2-CreERT2;Ai166
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites & Axon Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  56.0 days
Max Age :  56.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  frontal
Tertiary Brain Region :  primary motor, layer 3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Intratelencephalic (IT), tufted, bilateral-projecting
Original Format :  Vaa3D.swc
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  enhanced green fluorescent protein
Slicing Direction :  whole mount
Slice Thickness :  Not applicable
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  40x
Reconstruction Method :  Vaa3D
Date of Deposition :  2020-04-03
Date of Upload :  2021-10-06
Persistence Vector :  18453_2713-x27713-y9899.pvec
Note :  This reconstruction was obtained from the Allen Institute for Brain Science, and it is registered to the Common Coordinate Framework (CCF).

Reference Article
Related Article Reference :  Cellular Anatomy of the Mouse Primary Motor Cortex

Measurements
Soma Surface :  152.07 μm2
Number of Stems :  5
Number of Bifurcations :  311
Number of Branches :  627
Overall Width :  6012.07 μm
Overall Height :  9208.01 μm
Overall Depth :  2628.92 μm
Average Diameter :  2 μm
Total Length :  172972 μm
Total Surface :  1086820 μm2
Total Volume :  543408 μm3
Max Euclidean Distance :  9218.49 μm
Max Path Distance :  14463.6 μm
Max Branch Order :  50
Average Contraction :  0.91
Total Fragmentation :  9881
Partition Asymmetry :  0.58
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  84.61°
Average Bifurcation Angle Remote :  76.83°
Fractal Dimension :  1.02

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