8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_141420
Cell Name :  160509_p40_s1_s1_s_scaled
Archive Name :  Johenning
Species Name :  mouse
Strain :  C57BL/6N
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites Moderate, Axon Incomplete
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  40.0 days
Max Age :  40.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  olfactory cortex
Secondary Brain Region :  piriform
Tertiary Brain Region :  anterior, layer 2a
Primary Cell Class :  principal cell
Secondary Cell Class :  semilunar cell
Tertiary Cell Class :  Not reported
Original Format :  neuTube.swc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  biocytin
Slicing Direction :  transverse
Slice Thickness :  400  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  20x
Reconstruction Method :  neuTube
Date of Deposition :  2020-08-24
Date of Upload :  2020-10-13
Persistence Vector :  160509_p40_s1_s1_s_scaled.pvec
Note :  In the Morphology File (Original), the apical tree has layer-specific tags in the second SWC field: 4 for layer 2, 5 for layer 1b, and 6 for layer 1a

Reference Article
Related Article Reference :  Circuit-Specific Dendritic Development in the Piriform Cortex.

Measurements
Soma Surface :  587.07 μm2
Number of Stems :  8
Number of Bifurcations :  25
Number of Branches :  58
Overall Width :  195.73 μm
Overall Height :  356.77 μm
Overall Depth :  63.4 μm
Average Diameter :  2 μm
Total Length :  2723.36 μm
Total Surface :  17399.2 μm2
Total Volume :  9489.71 μm3
Max Euclidean Distance :  284.44 μm
Max Path Distance :  302.83 μm
Max Branch Order :  7
Average Contraction :  0.92
Total Fragmentation :  750
Partition Asymmetry :  0.4
Average Rall's Ratio :  1.79
Average Bifurcation Angle Local :  49.46°
Average Bifurcation Angle Remote :  54.11°
Fractal Dimension :  1.03

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