8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_289219
Cell Name :  1334_30dpi-Set3-ctrl-S2Annika-BS_c
Archive Name :  Figarella
Species Name :  mouse
Strain :  C57BL/6
Structural Domains :  Processes, No Soma
Physical Integrity :  Processes Moderate
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  4.0 months
Max Age :  6.0 months
Gender :  Female
Min Weight :  25 grams
Max Weight :  25 grams
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  layer 3-4
Tertiary Brain Region :  Not reported
Primary Cell Class :  Glia
Secondary Cell Class :  microglia
Tertiary Cell Class :  Iba1-positive
Original Format :  Imaris.ims
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  immunostaining
Slicing Direction :  coronal
Slice Thickness :  50  μm
Tissue Shrinkage :  Not reported
Objective Type :  water
Magnification :  20x , 40x
Reconstruction Method :  Imaris
Date of Deposition :  2024-06-19
Date of Upload :  2024-10-11
Persistence Vector :  1334_30dpi-Set3-ctrl-S2Annika-BS_c.pvec
Note :  This reconstruction was obtained 30 days post-injection (dpi) from a female in the mock group injected with the vehicle (PBS, and 5 mM glucose).

Reference Article
Related Article Reference :  Live imaging of microglia during sleeping sickness reveals early and heterogeneous inflammatory responses.

Measurements
Soma Surface :  N/A
Number of Stems :  2
Number of Bifurcations :  40
Number of Branches :  82
Overall Width :  12.76 μm
Overall Height :  23.25 μm
Overall Depth :  18.3 μm
Average Diameter :  0.45 μm
Total Length :  301.74 μm
Total Surface :  429.62 μm2
Total Volume :  62.78 μm3
Max Euclidean Distance :  20.65 μm
Max Path Distance :  34.29 μm
Max Branch Order :  16
Average Contraction :  0.85
Total Fragmentation :  1836
Partition Asymmetry :  0.51
Average Rall's Ratio :  2.04
Average Bifurcation Angle Local :  84.94°
Average Bifurcation Angle Remote :  78.39°
Fractal Dimension :  1.09

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