8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_289390
Cell Name :  1287_20dpi-Set5-ctrl-S100_BS
Archive Name :  Figarella
Species Name :  mouse
Strain :  C57BL/6
Structural Domains :  Processes, No Soma
Physical Integrity :  Processes Moderate
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  4.0 months
Max Age :  6.0 months
Gender :  Female
Min Weight :  25 grams
Max Weight :  25 grams
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  layer 3-4
Tertiary Brain Region :  Not reported
Primary Cell Class :  Glia
Secondary Cell Class :  microglia
Tertiary Cell Class :  Iba1-positive
Original Format :  Imaris.ims
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  immunostaining
Slicing Direction :  coronal
Slice Thickness :  50  μm
Tissue Shrinkage :  Not reported
Objective Type :  water
Magnification :  20x , 40x
Reconstruction Method :  Imaris
Date of Deposition :  2024-06-19
Date of Upload :  2024-10-11
Persistence Vector :  1287_20dpi-Set5-ctrl-S100_BS.pvec
Note :  This reconstruction was obtained 20 days post-injection (dpi) from a female in the mock group injected with the vehicle (PBS, and 5 mM glucose).

Reference Article
Related Article Reference :  Live imaging of microglia during sleeping sickness reveals early and heterogeneous inflammatory responses.

Measurements
Soma Surface :  N/A
Number of Stems :  2
Number of Bifurcations :  409
Number of Branches :  820
Overall Width :  22.77 μm
Overall Height :  52.84 μm
Overall Depth :  51.42 μm
Average Diameter :  0.46 μm
Total Length :  2753.9 μm
Total Surface :  3929.5 μm2
Total Volume :  585.95 μm3
Max Euclidean Distance :  40.68 μm
Max Path Distance :  71.52 μm
Max Branch Order :  26
Average Contraction :  0.89
Total Fragmentation :  15879
Partition Asymmetry :  0.62
Average Rall's Ratio :  2.13
Average Bifurcation Angle Local :  58.88°
Average Bifurcation Angle Remote :  67.27°
Fractal Dimension :  1.06

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