8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_151941
Cell Name :  10_917_856-GM16-Ctl-Plx-Chow-BNL16A-CA1Finished2n
Archive Name :  Acharya
Species Name :  mouse
Strain :  Tg(Thy1-EGFP)MJrs
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Moderate
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  8.0 months
Max Age :  9.0 months
Gender :  Male
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  hippocampus
Secondary Brain Region :  CA1
Tertiary Brain Region :  pyramidal layer
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Imaris.ims
Experiment Protocol :  in vivo
Experimental Condition :  Microglia depletion (PLX5622)
Staining Method :  enhanced green fluorescent protein
Slicing Direction :  coronal
Slice Thickness :  100  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  100x
Reconstruction Method :  Imaris
Date of Deposition :  2020-12-16
Date of Upload :  2021-05-24
Persistence Vector :  10_917_856-GM16-Ctl-Plx-Chow-BNL16A-CA1Finished2n.pvec
Note :  Unirradiated mice received PLX5622 diet (1200 PPM) from 2 weeks through the duration of all studies.

Reference Article
Related Article Reference :  Mitigation of helium irradiation-induced brain injury by microglia depletion.

Measurements
Soma Surface :  511.42 μm2
Number of Stems :  2
Number of Bifurcations :  1043
Number of Branches :  2088
Overall Width :  77.33 μm
Overall Height :  324.53 μm
Overall Depth :  57.46 μm
Average Diameter :  0.69 μm
Total Length :  4938.78 μm
Total Surface :  10554.8 μm2
Total Volume :  1890.95 μm3
Max Euclidean Distance :  304.75 μm
Max Path Distance :  333.12 μm
Max Branch Order :  184
Average Contraction :  0.97
Total Fragmentation :  3310
Partition Asymmetry :  0.84
Average Rall's Ratio :  1.88
Average Bifurcation Angle Local :  44.03°
Average Bifurcation Angle Remote :  56.25°
Fractal Dimension :  1.16

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