8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_151980
Cell Name :  10_808-GM14-He-Plx-Mit-BNL16A-CA11Finished2b
Archive Name :  Acharya
Species Name :  mouse
Strain :  Tg(Thy1-EGFP)MJrs
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Moderate
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  8.0 months
Max Age :  9.0 months
Gender :  Male
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  hippocampus
Secondary Brain Region :  CA1
Tertiary Brain Region :  pyramidal layer
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Imaris.ims
Experiment Protocol :  in vivo
Experimental Condition :  body helium irradiation (30 cGy) + Microglia depletion (PLX5622)
Staining Method :  enhanced green fluorescent protein
Slicing Direction :  coronal
Slice Thickness :  100  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  100x
Reconstruction Method :  Imaris
Date of Deposition :  2020-12-16
Date of Upload :  2021-05-24
Persistence Vector :  10_808-GM14-He-Plx-Mit-BNL16A-CA11Finished2b.pvec
Note :  During irradiation, mice were loosely restrained in Lucite containers with breathing holes (3 x 1.5 x 1.5 in.) for exposure to 30 cGy of 400 MeV/n 4 He particles (dose rate = 15-25 cGy/min). Two weeks after irradiation mice were provided with PLX5622 chow (1200 PPM). All mice were maintained on their respective PLX5622 diet from 2 weeks postirradiation through the duration of all studies.

Reference Article
Related Article Reference :  Mitigation of helium irradiation-induced brain injury by microglia depletion.

Measurements
Soma Surface :  463.77 μm2
Number of Stems :  6
Number of Bifurcations :  718
Number of Branches :  1442
Overall Width :  97.8 μm
Overall Height :  212.99 μm
Overall Depth :  32.72 μm
Average Diameter :  0.98 μm
Total Length :  3217.25 μm
Total Surface :  9271.07 μm2
Total Volume :  2462.89 μm3
Max Euclidean Distance :  202.6 μm
Max Path Distance :  219.24 μm
Max Branch Order :  118
Average Contraction :  0.92
Total Fragmentation :  2468
Partition Asymmetry :  0.8
Average Rall's Ratio :  1.98
Average Bifurcation Angle Local :  21.33°
Average Bifurcation Angle Remote :  58.71°
Fractal Dimension :  1.09

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