8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_36640
Cell Name :  040823EG2-2
Archive Name :  Staiger
Species Name :  rat
Strain :  Wistar
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  20.0 days
Max Age :  25.0 days
Gender :  Male
Min Weight :  Not reported
Max Weight :  Not reported
Development :  young
Primary Brain Region :  neocortex
Secondary Brain Region :  somatosensory
Tertiary Brain Region :  barrel, layer 2-3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Regular spiking
Original Format :  Neurolucida.dat
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  biocytin
Slicing Direction :  coronal
Slice Thickness :  300  μm
Tissue Shrinkage :  Reported 12.5% in xy, 50% in z
Not corrected
Objective Type :  oil
Magnification :  60x
Reconstruction Method :  Neurolucida
Date of Deposition :  2014-08-04
Date of Upload :  2016-03-04
Persistence Vector :  040823EG2-2.pvec
Note :  The slicing direction was either coronal or at an oblique angle approximately in parallel to the barrel arcs.

Reference Article
Related Article Reference :  A gradual depth-dependent change in connectivity features of supragranular pyramidal cells in rat barrel cortex.

Measurements
Soma Surface :  534.69 μm2
Number of Stems :  8
Number of Bifurcations :  43
Number of Branches :  94
Overall Width :  168.42 μm
Overall Height :  303.42 μm
Overall Depth :  29.11 μm
Average Diameter :  0.62 μm
Total Length :  3342.68 μm
Total Surface :  6844.02 μm2
Total Volume :  1415.73 μm3
Max Euclidean Distance :  250.99 μm
Max Path Distance :  350.8 μm
Max Branch Order :  15
Average Contraction :  0.77
Total Fragmentation :  2957
Partition Asymmetry :  0.52
Average Rall's Ratio :  1.4
Average Bifurcation Angle Local :  81.75°
Average Bifurcation Angle Remote :  63.99°
Fractal Dimension :  1.08

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