8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_05499
Cell Name :  04-cutL5pyr-na
Archive Name :  Bikson
Species Name :  rat
Strain :  Sprague-Dawley
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites Moderate, Axon Incomplete
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  21.0 days
Max Age :  25.0 days
Gender :  Male
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  frontal
Tertiary Brain Region :  precentral gyrus, layer 5
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Neurolucida.asc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  biocytin
Slicing Direction :  coronal
Slice Thickness :  300  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  60x
Reconstruction Method :  Neurolucida
Date of Deposition :  2009-04-16
Date of Upload :  2009-09-04
Persistence Vector :  04-cutL5pyr-na.pvec
Note :  The naming convention is: xx_LyPyr_zz. where xx is the electric field polarization coefficient in units of .xx mV per mV/mm of electric field applied, the y in Ly is a number corresponding to the layer of the neuron and zz is a number of the firing threshold in response to electric field stimulation: the cell fired with zz mV/mm electric field stimulation.

Reference Article
Related Article Reference :  Role of cortical cell type and neuronal morphology in electric field stimulation

Measurements
Soma Surface :  740.32 μm2
Number of Stems :  6
Number of Bifurcations :  19
Number of Branches :  44
Overall Width :  437.41 μm
Overall Height :  463.26 μm
Overall Depth :  10.49 μm
Average Diameter :  1.88 μm
Total Length :  4147.43 μm
Total Surface :  24232.8 μm2
Total Volume :  11761 μm3
Max Euclidean Distance :  328.31 μm
Max Path Distance :  374.21 μm
Max Branch Order :  7
Average Contraction :  0.92
Total Fragmentation :  1431
Partition Asymmetry :  0.44
Average Rall's Ratio :  1.83
Average Bifurcation Angle Local :  63.43°
Average Bifurcation Angle Remote :  50.15°
Fractal Dimension :  1.02

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