# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\CA1-dendrites-20X-1_z00_ch00_5.ims.swc.swc created with StdSwc version 1.31 on 4/16/18.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\CA1-dendrites-20X-1_z00_ch00_5.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  345.9  173.0  23.03
4.5  Radius of terminal line 252 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  418.5  68.98  14.97
4.5  Radius of terminal line 394 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  406.2  60.85  27.25
4.5  Radius of terminal line 673 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  451.3  120.5  9.25
4.5  Radius of terminal line 796 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  413.9  198.8  30.25
4.5  Radius of terminal line 988 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  458.1  226.2  22.25
4.5  Radius of terminal line 1093 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  454.7  163.1  23.25
4.5  Radius of terminal line 1285 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  446.0  122.9  31.75
4.5  Radius of terminal line 1371 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  430.9  111.2  22.25
4.5  Radius of terminal line 1523 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  468.6  125.7  26.75
4.5  Radius of terminal line 1580 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  366.3  177.7  17.8
4.5  Radius of terminal line 5201 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  412.8  95.96  28.75
4.5  Radius of terminal line 5252 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  410.3  100.5  26.25
4.5  Radius of terminal line 5497 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  357.8  24.08  27.67
4.5  Radius of terminal line 5498 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  349.9  89.37  27.75
4.5  Radius of terminal line 5698 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  321.8  61.17  19.25
4.5  Radius of terminal line 5774 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  301.0  100.0  22.75
4.5  Radius of terminal line 5790 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  347.2  178.6  28.75
4.5  Radius of terminal line 6028 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  347.4  62.78  18.25
4.5  Radius of terminal line 6167 at 0.914 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  375.4  102.5  12.75
2.4  Seg length ending at pt. 164 >= 6.0 stdevs above mean at 1.2161.  (no action taken)
     B1      X, Y, Z:  390.6  102.5  21.58
2.5  Seg length ending at pt. 395 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  345.9  173.0  23.03
2.4  Seg length ending at pt. 398 >= 6.0 stdevs above mean at 1.3069.  (no action taken)
     B1      X, Y, Z:  343.9  174.3  24.25
2.4  Seg length ending at pt. 401 >= 6.0 stdevs above mean at 1.3162.  (no action taken)
     B1      X, Y, Z:  341.9  176.3  25.62
2.4  Seg length ending at pt. 402 >= 6.0 stdevs above mean at 1.5748.  (no action taken)
     B1      X, Y, Z:  340.7  176.5  26.62
2.4  Seg length ending at pt. 421 >= 6.0 stdevs above mean at 1.1842.  (no action taken)
     B1      X, Y, Z:  340.2  185.8  25.67
2.4  Seg length ending at pt. 422 >= 6.0 stdevs above mean at 1.1294.  (no action taken)
     B1      X, Y, Z:  341.3  185.6  25.51
2.4  Seg length ending at pt. 696 >= 6.0 stdevs above mean at 1.1181.  (no action taken)
     B1      X, Y, Z:  367.3  179.4  25.05
2.4  Seg length ending at pt. 862 >= 6.0 stdevs above mean at 1.2207.  (no action taken)
     B1      X, Y, Z:  408.0  189.4  25.98
2.4  Seg length ending at pt. 1525 >= 6.0 stdevs above mean at 1.1446.  (no action taken)
     B1      X, Y, Z:  338.0  187.2  25.55
2.4  Seg length ending at pt. 1526 >= 6.0 stdevs above mean at 1.1218.  (no action taken)
     B1      X, Y, Z:  338.5  186.5  24.83
2.4  Seg length ending at pt. 1527 >= 6.0 stdevs above mean at 1.1116.  (no action taken)
     B1      X, Y, Z:  339.3  186.1  24.17
2.4  Seg length ending at pt. 1529 >= 6.0 stdevs above mean at 1.1225.  (no action taken)
     B1      X, Y, Z:  341.1  185.7  23.1
2.4  Seg length ending at pt. 1534 >= 6.0 stdevs above mean at 1.2189.  (no action taken)
     B1      X, Y, Z:  345.8  187.2  21.91
2.4  Seg length ending at pt. 4970 >= 6.0 stdevs above mean at 1.1916.  (no action taken)
     B1      X, Y, Z:  338.8  187.6  25.65
2.4  Seg length ending at pt. 4972 >= 6.0 stdevs above mean at 1.1137.  (no action taken)
     B1      X, Y, Z:  339.4  185.8  24.6
2.4  Seg length ending at pt. 5371 >= 6.0 stdevs above mean at 1.3647.  (no action taken)
     B1      X, Y, Z:  350.3  88.6  27.78
2.4  Seg length ending at pt. 5567 >= 6.0 stdevs above mean at 1.1832.  (no action taken)
     B1      X, Y, Z:  327.3  128.2  23.19
2.4  Seg length ending at pt. 5792 >= 6.0 stdevs above mean at 1.3928.  (no action taken)
     B1      X, Y, Z:  340.8  179.2  24.85
2.4  Seg length ending at pt. 5938 >= 6.0 stdevs above mean at 1.1234.  (no action taken)
     B1      X, Y, Z:  351.8  106.7  20.64
2.4  Seg length ending at pt. 6034 >= 6.0 stdevs above mean at 1.1234.  (no action taken)
     B1      X, Y, Z:  346.6  155.8  19.55
2.5  Seg length ending at pt. 1581 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  337.9  188.1  26.25
2.4  Seg length ending at pt. 1582 >= 6.0 stdevs above mean at 8.6678.  (no action taken)
     B1      X, Y, Z:  333.1  195.3  26.75
2.4  Seg length ending at pt. 1583 >= 6.0 stdevs above mean at 1.5675.  (no action taken)
     B1      X, Y, Z:  331.9  196.3  26.62
2.4  Seg length ending at pt. 1699 >= 6.0 stdevs above mean at 1.5824.  (no action taken)
     B1      X, Y, Z:  293.1  243.7  27.87
1.2  Line 1524 of type 4 links to incorrect type 3      (type changed to 3)
     A       X, Y, Z:  337.9  188.1  26.25
1.2  Line 1582 of type 4 links to incorrect type 3.  (no action taken)
     B1      X, Y, Z:  333.1  195.3  26.75
2.7  Line 5498 of rad 0.914 is an included side branch.  (removed)
     A      X, Y, Z:  349.9  89.37  27.75
2.7  Line 3508 of rad 0.914 is an included side branch.  (removed)
     A      X, Y, Z:  75.31  325.6  16.75
2.6  Line 417 and line 1524 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  337.9  188.1  26.25
2.6  Line 473 and line 1580 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  366.3  177.7  17.8
 
 


Number of type A irregularities = 5
Number of type B1 irregularities = 46
Number of type B2 irregularities = 0
Number of type C irregularities = 0
