# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PS19-microglia.ims.swc.swc created with StdSwc version 1.31 on 5/31/19.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PS19-microglia.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  278.09  306.0  9.05
2.5  Seg length ending at pt. 2 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  278.08  306.03  9.05
2.5  Seg length ending at pt. 4 <= 0.1 at 0.0539.  (removed)
     A       X, Y, Z:  278.05  306.11  9.05
2.5  Seg length ending at pt. 795 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  243.35  327.53  4.28
2.5  Seg length ending at pt. 797 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  243.37  327.52  4.2
2.5  Seg length ending at pt. 799 <= 0.1 at 0.0608.  (removed)
     A       X, Y, Z:  243.48  327.54  4.22
2.5  Seg length ending at pt. 801 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  243.52  327.51  4.17
2.5  Seg length ending at pt. 803 <= 0.1 at 0.0332.  (removed)
     A       X, Y, Z:  243.5  327.51  4.16
2.5  Seg length ending at pt. 1349 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  256.33  280.12  8.53
2.5  Seg length ending at pt. 1351 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  256.28  280.13  8.58
2.5  Seg length ending at pt. 1767 <= 0.1 at 0.0412.  (removed)
     A       X, Y, Z:  304.14  239.28  6.56
2.5  Seg length ending at pt. 2013 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  279.0  277.93  5.75
2.5  Seg length ending at pt. 2015 <= 0.1 at 0.0877.  (removed)
     A       X, Y, Z:  278.96  277.98  5.8
2.4  Seg length ending at pt. 2054 >= 6.0 stdevs above mean at 2.3712.  (no action taken)
     B1      X, Y, Z:  280.18  307.12  9.06
2.5  Seg length ending at pt. 2721 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  278.09  306.0  9.05
2.5  Seg length ending at pt. 3802 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  278.09  306.0  9.05
2.5  Seg length ending at pt. 4119 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  278.09  306.0  9.05
2.5  Seg length ending at pt. 4418 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  278.09  306.0  9.05
2.5  Seg length ending at pt. 4437 <= 0.1 at 0.086.  (removed)
     A       X, Y, Z:  258.11  298.07  9.03
2.5  Seg length ending at pt. 4652 <= 0.1 at 0.0825.  (removed)
     A       X, Y, Z:  245.48  304.78  6.8
2.5  Seg length ending at pt. 3 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  278.07  306.06  9.05
2.5  Seg length ending at pt. 798 <= 0.1 at 0.0877.  (removed)
     A       X, Y, Z:  243.42  327.54  4.21
2.5  Seg length ending at pt. 802 <= 0.1 at 0.0374.  (removed)
     A       X, Y, Z:  243.53  327.5  4.15
2.5  Seg length ending at pt. 1350 <= 0.1 at 0.0361.  (removed)
     A       X, Y, Z:  256.32  280.12  8.54
2.5  Seg length ending at pt. 1768 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  304.15  239.25  6.55
2.5  Seg length ending at pt. 2014 <= 0.1 at 0.0678.  (removed)
     A       X, Y, Z:  279.02  277.93  5.76
2.6  Line 1 and line 909 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  278.09  306.0  9.05
2.6  Line 1 and line 1427 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  278.09  306.0  9.05
2.6  Line 1 and line 2053 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  278.09  306.0  9.05
2.6  Line 30 and line 136 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  269.09  331.0  6.51
2.6  Line 909 and line 1427 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  278.09  306.0  9.05
2.6  Line 909 and line 2053 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  278.09  306.0  9.05
2.6  Line 1427 and line 2053 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  278.09  306.0  9.05
4.4  Line 18 of rad 0.975 links to 17 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  273.85  320.29  8.97
4.4  Line 255 of rad 1.229 links to 254 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  274.19  321.44  8.98
4.4  Line 336 of rad 1.039 links to 335 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  271.63  319.69  8.97
4.4  Line 918 of rad 0.936 links to 917 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  272.17  297.49  8.99
4.4  Line 1178 of rad 0.894 links to 1177 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  261.12  287.24  9.06
4.4  Line 1214 of rad 1.692 links to 1213 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  254.4  281.36  9.0
4.4  Line 1387 of rad 1.676 links to 1386 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  252.95  282.85  8.99
4.4  Line 1407 of rad 1.041 links to 1386 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  252.8  283.31  8.99
4.4  Line 2070 of rad 1.738 links to 2069 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  296.18  306.48  8.97
4.4  Line 2603 of rad 0.898 links to 2602 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  297.52  330.86  9.02
4.4  Line 2619 of rad 0.893 links to 2602 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  297.51  330.84  9.02
4.4  Line 4253 of rad 1.293 links to 4252 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  311.48  273.54  8.81
4.4  Line 4482 of rad 1.638 links to 4481 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  252.19  290.54  8.95
4.4  Line 4525 of rad 1.445 links to 4481 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  252.3  290.67  8.95
4.4  Line 4543 of rad 1.164 links to 4478 of rad 0.441.  (no action taken)
     B1      X, Y, Z:  253.65  292.2  8.96
2.1  Line 1 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  278.09  306.0  9.05
2.1  Line 4436 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  258.18  298.02  9.03
 
 


Number of type A irregularities = 24
Number of type B1 irregularities = 26
Number of type B2 irregularities = 0
Number of type C irregularities = 0
