# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\C3aR-KO-microglia.ims.swc.swc created with StdSwc version 1.31 on 5/31/19.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\C3aR-KO-microglia.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  200.62  194.79  10.1
4.3  Radius of line 2 at 8.004 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.63  194.82  10.1
4.3  Radius of line 3 at 8.004 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.65  194.85  10.1
4.3  Radius of line 4 at 8.004 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.68  194.91  10.1
4.3  Radius of line 5 at 8.004 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.74  195.03  10.1
4.3  Radius of line 6 at 8.031 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.92  195.31  10.1
4.3  Radius of line 7 at 8.058 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.16  195.63  10.11
4.3  Radius of line 8 at 8.085 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.47  195.99  10.12
4.3  Radius of line 9 at 7.942 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.71  196.23  10.13
4.3  Radius of line 10 at 7.794 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.98  196.51  10.15
4.3  Radius of line 11 at 7.637 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  202.27  196.83  10.15
4.3  Radius of line 12 at 7.468 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  202.55  197.18  10.09
4.3  Radius of line 1881 at 7.977 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.62  194.79  10.1
4.3  Radius of line 1882 at 7.824 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.74  195.02  10.1
4.3  Radius of line 1883 at 7.666 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.93  195.29  10.11
4.3  Radius of line 1884 at 7.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.18  195.61  10.13
4.3  Radius of line 1885 at 7.325 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.5  195.97  10.12
4.3  Radius of line 2713 at 7.977 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.62  194.79  10.1
4.3  Radius of line 2714 at 7.794 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.95  195.34  10.11
4.3  Radius of line 2715 at 7.627 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  201.43  195.78  10.08
4.3  Radius of line 2716 at 7.487 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  202.03  195.97  9.98
4.3  Radius of line 2717 at 7.384 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  202.61  195.92  9.84
4.3  Radius of line 2718 at 7.324 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  203.1  195.71  9.79
4.3  Radius of line 2719 at 7.308 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  203.51  195.47  9.84
4.3  Radius of line 2720 at 7.33 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  203.91  195.23  9.95
4.3  Radius of line 2721 at 7.381 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  204.3  194.98  10.06
4.3  Radius of line 2722 at 7.446 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  204.68  194.68  10.11
4.3  Radius of line 2723 at 7.508 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  205.03  194.35  10.13
4.3  Radius of line 2724 at 7.548 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  205.35  193.99  10.13
4.3  Radius of line 2725 at 7.551 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  205.59  193.62  10.12
4.3  Radius of line 2726 at 7.503 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  205.83  193.27  10.11
4.3  Radius of line 2727 at 7.398 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  206.1  192.99  10.11
4.3  Radius of line 3727 at 7.977 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.62  194.79  10.1
4.3  Radius of line 3728 at 7.792 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.09  194.63  10.09
4.3  Radius of line 3729 at 7.603 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  199.61  194.46  10.08
4.3  Radius of line 3730 at 7.405 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  199.18  194.25  9.99
4.3  Radius of line 4842 at 7.977 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.62  194.79  10.1
4.5  Radius of terminal line 6152 at 4.137 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  172.62  124.17  9.72
2.5  Seg length ending at pt. 2 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  200.63  194.82  10.1
2.5  Seg length ending at pt. 4 <= 0.1 at 0.0671.  (removed)
     A       X, Y, Z:  200.68  194.91  10.1
2.5  Seg length ending at pt. 268 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  187.19  286.13  5.84
2.5  Seg length ending at pt. 1062 <= 0.1 at 0.0894.  (removed)
     A       X, Y, Z:  230.92  212.37  6.64
2.5  Seg length ending at pt. 1881 <= 0.1 at 0.0671.  (removed)
     A       X, Y, Z:  200.62  194.79  10.1
2.5  Seg length ending at pt. 2057 <= 0.1 at 0.0877.  (removed)
     A       X, Y, Z:  161.34  241.65  5.48
2.5  Seg length ending at pt. 2713 <= 0.1 at 0.0671.  (removed)
     A       X, Y, Z:  200.62  194.79  10.1
2.5  Seg length ending at pt. 2904 <= 0.1 at 0.0825.  (removed)
     A       X, Y, Z:  253.43  162.11  3.65
2.5  Seg length ending at pt. 3727 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  200.62  194.79  10.1
2.5  Seg length ending at pt. 4842 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  200.62  194.79  10.1
2.4  Seg length ending at pt. 4843 >= 6.0 stdevs above mean at 0.7952.  (no action taken)
     B1      X, Y, Z:  200.71  194.0  10.09
2.4  Seg length ending at pt. 4932 >= 6.0 stdevs above mean at 0.7864.  (no action taken)
     B1      X, Y, Z:  193.37  160.86  7.17
2.4  Seg length ending at pt. 4933 >= 6.0 stdevs above mean at 0.8223.  (no action taken)
     B1      X, Y, Z:  193.23  160.05  7.19
2.5  Seg length ending at pt. 4934 <= 0.1 at 0.0283.  (removed)
     A       X, Y, Z:  193.23  160.03  7.17
2.5  Seg length ending at pt. 4936 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  193.23  160.01  7.17
2.5  Seg length ending at pt. 5647 <= 0.1 at 0.0949.  (removed)
     A       X, Y, Z:  155.66  111.03  2.6
2.5  Seg length ending at pt. 6764 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  244.72  120.87  4.85
2.5  Seg length ending at pt. 3 <= 0.1 at 0.0671.  (removed)
     A       X, Y, Z:  200.65  194.85  10.1
2.5  Seg length ending at pt. 4935 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  193.24  160.01  7.16
2.5  Seg length ending at pt. 4937 <= 0.1 at 0.0906.  (removed)
     A       X, Y, Z:  193.23  159.96  7.2
2.6  Line 1079 and line 1235 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  236.13  215.91  6.99
4.4  Line 426 of rad 0.903 links to 373 of rad 0.378.  (no action taken)
     B1      X, Y, Z:  208.5  314.13  10.06
4.4  Line 895 of rad 0.814 links to 129 of rad 0.378.  (no action taken)
     B1      X, Y, Z:  197.48  238.36  10.1
4.4  Line 5302 of rad 0.922 links to 5239 of rad 0.378.  (no action taken)
     B1      X, Y, Z:  128.6  84.01  10.08
4.4  Line 6180 of rad 0.905 links to 6179 of rad 0.378.  (no action taken)
     B1      X, Y, Z:  173.19  136.4  10.06
4.4  Line 6522 of rad 1.71 links to 4861 of rad 0.378.  (no action taken)
     B1      X, Y, Z:  201.05  185.42  10.12
4.4  Line 7065 of rad 0.836 links to 6656 of rad 0.378.  (no action taken)
     B1      X, Y, Z:  220.06  142.46  10.04
2.1  Line 1 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  200.62  194.79  10.1
2.1  Line 4933 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  193.23  160.05  7.19
 
 


Number of type A irregularities = 17
Number of type B1 irregularities = 50
Number of type B2 irregularities = 0
Number of type C irregularities = 0
