# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\285622-3mo-GFAP-IFN-20x-cortex-1b.swc.swc created with StdSwc version 1.31 on 5/20/22.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\285622-3mo-GFAP-IFN-20x-cortex-1b.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  64.77  89.98  19.94
4.3  Radius of line 30 at 2.17308 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  58.0  95.0  21.8
4.3  Radius of line 31 at 2.21353 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  57.68  95.0  21.78
2.5  Seg length ending at pt. 125 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  35.23  108.54  18.81
2.5  Seg length ending at pt. 271 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  35.23  108.54  18.81
2.5  Seg length ending at pt. 1059 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  65.25  115.27  24.52
2.5  Seg length ending at pt. 1114 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  65.25  115.27  24.52
2.5  Seg length ending at pt. 1355 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  65.35  107.13  22.91
2.4  Seg length ending at pt. 1767 >= 6.0 stdevs above mean at 0.9652.  (no action taken)
     B1      X, Y, Z:  89.0  100.01  18.0
2.5  Seg length ending at pt. 2053 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  65.29  90.29  20.26
2.5  Seg length ending at pt. 2530 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  64.77  89.98  19.94
2.5  Seg length ending at pt. 2997 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  65.15  90.09  19.15
2.4  Seg length ending at pt. 4837 >= 6.0 stdevs above mean at 0.9985.  (no action taken)
     B1      X, Y, Z:  63.9  58.8  19.94
2.5  Seg length ending at pt. 5236 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  93.62  53.88  25.32
2.5  Seg length ending at pt. 5268 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  75.46  65.97  21.59
2.6  Line 1 and line 616 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  64.77  89.98  19.94
2.6  Line 19 and line 401 have the same coordinates.  (second line removed)
     A      X, Y, Z:  60.98  93.43  21.2
2.6  Line 80 and line 364 have the same coordinates.  (second line removed)
     A      X, Y, Z:  44.74  100.93  24.21
2.6  Line 84 and line 314 have the same coordinates.  (second line removed)
     A      X, Y, Z:  44.2  101.56  23.44
2.6  Line 160 and line 258 have the same coordinates.  (second line removed)
     A      X, Y, Z:  27.51  114.98  16.6
2.6  Line 195 and line 242 have the same coordinates.  (second line removed)
     A      X, Y, Z:  17.66  118.3  14.89
2.6  Line 201 and line 222 have the same coordinates.  (second line removed)
     A      X, Y, Z:  17.44  119.98  15.14
2.6  Line 432 and line 542 have the same coordinates.  (second line removed)
     A      X, Y, Z:  57.15  101.82  21.29
2.6  Line 622 and line 1483 have the same coordinates.  (second line removed)
     A      X, Y, Z:  66.16  91.45  21.77
2.6  Line 668 and line 1411 have the same coordinates.  (second line removed)
     A      X, Y, Z:  65.69  105.09  24.03
2.6  Line 675 and line 833 have the same coordinates.  (second line removed)
     A      X, Y, Z:  65.46  106.83  23.03
2.6  Line 706 and line 788 have the same coordinates.  (second line removed)
     A      X, Y, Z:  58.71  110.41  12.85
2.6  Line 747 and line 766 have the same coordinates.  (second line removed)
     A      X, Y, Z:  53.36  119.86  3.64
2.6  Line 849 and line 1046 have the same coordinates.  (second line removed)
     A      X, Y, Z:  64.17  111.65  21.21
2.6  Line 936 and line 991 have the same coordinates.  (second line removed)
     A      X, Y, Z:  48.54  132.05  17.65
2.6  Line 1015 and line 1035 have the same coordinates.  (second line removed)
     A      X, Y, Z:  47.26  139.62  18.36
2.6  Line 1120 and line 1191 have the same coordinates.  (second line removed)
     A      X, Y, Z:  67.19  114.73  26.37
2.6  Line 1134 and line 1143 have the same coordinates.  (second line removed)
     A      X, Y, Z:  69.84  116.65  28.45
2.6  Line 1171 and line 1184 have the same coordinates.  (second line removed)
     A      X, Y, Z:  78.27  118.94  27.74
2.6  Line 1252 and line 1263 have the same coordinates.  (second line removed)
     A      X, Y, Z:  67.0  129.6  17.78
2.6  Line 1373 and line 1409 have the same coordinates.  (second line removed)
     A      X, Y, Z:  70.64  109.24  22.39
2.6  Line 1506 and line 1972 have the same coordinates.  (second line removed)
     A      X, Y, Z:  73.04  93.99  24.5
2.6  Line 1537 and line 1641 have the same coordinates.  (second line removed)
     A      X, Y, Z:  80.21  97.24  17.22
2.6  Line 1555 and line 1582 have the same coordinates.  (second line removed)
     A      X, Y, Z:  79.67  101.85  12.34
2.6  Line 1603 and line 1607 have the same coordinates.  (second line removed)
     A      X, Y, Z:  73.77  104.22  10.72
2.6  Line 1645 and line 1860 have the same coordinates.  (second line removed)
     A      X, Y, Z:  81.87  97.25  18.47
2.6  Line 1673 and line 1767 have the same coordinates.  (second line removed)
     A      X, Y, Z:  88.9  100.0  17.04
2.6  Line 1694 and line 1749 have the same coordinates.  (second line removed)
     A      X, Y, Z:  93.74  102.95  12.87
2.6  Line 1701 and line 1735 have the same coordinates.  (second line removed)
     A      X, Y, Z:  95.46  104.65  12.47
2.6  Line 1776 and line 1789 have the same coordinates.  (second line removed)
     A      X, Y, Z:  89.5  100.16  23.84
2.6  Line 1831 and line 1858 have the same coordinates.  (second line removed)
     A      X, Y, Z:  87.69  110.65  25.19
2.6  Line 1865 and line 1962 have the same coordinates.  (second line removed)
     A      X, Y, Z:  83.48  96.06  17.25
2.6  Line 1886 and line 1943 have the same coordinates.  (second line removed)
     A      X, Y, Z:  88.28  92.23  16.08
2.6  Line 1995 and line 2038 have the same coordinates.  (second line removed)
     A      X, Y, Z:  75.85  92.29  34.8
2.6  Line 2068 and line 2312 have the same coordinates.  (second line removed)
     A      X, Y, Z:  68.67  88.27  24.4
2.6  Line 2112 and line 2297 have the same coordinates.  (second line removed)
     A      X, Y, Z:  80.95  84.73  26.84
2.6  Line 2135 and line 2218 have the same coordinates.  (second line removed)
     A      X, Y, Z:  86.68  87.56  26.3
2.6  Line 2168 and line 2172 have the same coordinates.  (second line removed)
     A      X, Y, Z:  95.89  86.35  28.29
2.6  Line 2239 and line 2247 have the same coordinates.  (second line removed)
     A      X, Y, Z:  88.99  81.63  23.46
2.6  Line 2340 and line 2478 have the same coordinates.  (second line removed)
     A      X, Y, Z:  74.21  81.62  28.05
2.6  Line 2367 and line 2468 have the same coordinates.  (second line removed)
     A      X, Y, Z:  80.49  76.43  28.61
2.6  Line 2383 and line 2407 have the same coordinates.  (second line removed)
     A      X, Y, Z:  83.6  72.73  31.24
2.6  Line 2500 and line 2512 have the same coordinates.  (second line removed)
     A      X, Y, Z:  71.06  81.2  40.64
2.6  Line 2531 and line 2926 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  65.15  90.09  19.15
2.6  Line 2541 and line 2886 have the same coordinates.  (second line removed)
     A      X, Y, Z:  66.23  89.07  14.42
2.6  Line 2556 and line 2872 have the same coordinates.  (second line removed)
     A      X, Y, Z:  68.72  85.27  12.46
2.6  Line 2574 and line 2841 have the same coordinates.  (second line removed)
     A      X, Y, Z:  72.65  81.6  12.98
2.6  Line 2581 and line 2821 have the same coordinates.  (second line removed)
     A      X, Y, Z:  74.31  80.77  13.14
2.6  Line 2619 and line 2659 have the same coordinates.  (second line removed)
     A      X, Y, Z:  84.57  76.19  14.1
2.6  Line 2670 and line 2685 have the same coordinates.  (second line removed)
     A      X, Y, Z:  86.2  78.95  10.38
2.6  Line 2696 and line 2807 have the same coordinates.  (second line removed)
     A      X, Y, Z:  89.26  77.22  7.61
2.6  Line 2723 and line 2787 have the same coordinates.  (second line removed)
     A      X, Y, Z:  94.74  71.24  7.43
2.6  Line 2759 and line 2769 have the same coordinates.  (second line removed)
     A      X, Y, Z:  102.0  63.25  7.97
2.6  Line 2982 and line 2989 have the same coordinates.  (second line removed)
     A      X, Y, Z:  60.25  101.81  2.62
2.6  Line 3000 and line 3836 have the same coordinates.  (second line removed)
     A      X, Y, Z:  64.8  89.26  19.97
2.6  Line 3020 and line 3610 have the same coordinates.  (second line removed)
     A      X, Y, Z:  59.1  87.57  20.44
2.6  Line 3023 and line 3433 have the same coordinates.  (second line removed)
     A      X, Y, Z:  58.6  87.11  20.41
2.6  Line 3060 and line 3423 have the same coordinates.  (second line removed)
     A      X, Y, Z:  47.84  85.95  15.75
2.6  Line 3065 and line 3298 have the same coordinates.  (second line removed)
     A      X, Y, Z:  46.59  85.86  15.94
2.6  Line 3074 and line 3296 have the same coordinates.  (second line removed)
     A      X, Y, Z:  44.49  84.75  15.84
2.6  Line 3104 and line 3165 have the same coordinates.  (second line removed)
     A      X, Y, Z:  37.58  79.33  16.9
2.6  Line 3190 and line 3294 have the same coordinates.  (second line removed)
     A      X, Y, Z:  37.73  71.55  18.23
2.6  Line 3213 and line 3257 have the same coordinates.  (second line removed)
     A      X, Y, Z:  34.53  65.69  22.68
2.6  Line 3263 and line 3279 have the same coordinates.  (second line removed)
     A      X, Y, Z:  32.24  65.49  22.91
2.6  Line 3331 and line 3398 have the same coordinates.  (second line removed)
     A      X, Y, Z:  41.58  93.35  10.05
2.6  Line 3346 and line 3396 have the same coordinates.  (second line removed)
     A      X, Y, Z:  41.16  97.46  8.84
2.6  Line 3355 and line 3362 have the same coordinates.  (second line removed)
     A      X, Y, Z:  39.94  99.76  6.22
2.6  Line 3493 and line 3578 have the same coordinates.  (second line removed)
     A      X, Y, Z:  46.78  74.02  19.07
2.6  Line 3517 and line 3558 have the same coordinates.  (second line removed)
     A      X, Y, Z:  40.14  72.55  15.2
2.6  Line 3648 and line 3695 have the same coordinates.  (second line removed)
     A      X, Y, Z:  55.13  80.86  33.1
2.6  Line 3704 and line 3809 have the same coordinates.  (second line removed)
     A      X, Y, Z:  52.27  79.61  33.58
2.6  Line 3723 and line 3802 have the same coordinates.  (second line removed)
     A      X, Y, Z:  47.01  80.51  36.57
2.6  Line 3758 and line 3782 have the same coordinates.  (second line removed)
     A      X, Y, Z:  37.52  84.41  36.86
2.6  Line 3885 and line 5288 have the same coordinates.  (second line removed)
     A      X, Y, Z:  66.39  76.01  23.16
2.6  Line 3928 and line 5058 have the same coordinates.  (second line removed)
     A      X, Y, Z:  71.19  64.3  24.06
2.6  Line 3948 and line 4727 have the same coordinates.  (second line removed)
     A      X, Y, Z:  72.2  58.32  24.4
2.6  Line 3951 and line 4255 have the same coordinates.  (second line removed)
     A      X, Y, Z:  72.41  57.77  23.94
2.6  Line 3964 and line 4155 have the same coordinates.  (second line removed)
     A      X, Y, Z:  71.37  54.43  21.79
2.6  Line 3974 and line 4040 have the same coordinates.  (second line removed)
     A      X, Y, Z:  70.69  51.68  20.41
2.6  Line 4042 and line 4101 have the same coordinates.  (second line removed)
     A      X, Y, Z:  70.4  51.09  21.5
2.6  Line 4187 and line 4192 have the same coordinates.  (second line removed)
     A      X, Y, Z:  62.5  52.53  28.33
2.6  Line 4285 and line 4320 have the same coordinates.  (second line removed)
     A      X, Y, Z:  80.66  54.24  30.32
2.6  Line 4329 and line 4682 have the same coordinates.  (second line removed)
     A      X, Y, Z:  81.1  51.09  30.26
2.6  Line 4350 and line 4610 have the same coordinates.  (second line removed)
     A      X, Y, Z:  79.68  45.64  29.86
2.6  Line 4372 and line 4551 have the same coordinates.  (second line removed)
     A      X, Y, Z:  81.54  39.59  27.96
2.6  Line 4380 and line 4452 have the same coordinates.  (second line removed)
     A      X, Y, Z:  82.26  37.36  27.93
2.6  Line 4419 and line 4450 have the same coordinates.  (second line removed)
     A      X, Y, Z:  79.55  26.44  24.93
2.6  Line 4492 and line 4533 have the same coordinates.  (second line removed)
     A      X, Y, Z:  88.78  27.02  27.14
2.6  Line 4754 and line 4837 have the same coordinates.  (second line removed)
     A      X, Y, Z:  64.03  58.79  18.95
2.6  Line 4782 and line 4817 have the same coordinates.  (second line removed)
     A      X, Y, Z:  57.84  53.09  16.68
2.6  Line 4844 and line 4951 have the same coordinates.  (second line removed)
     A      X, Y, Z:  62.96  59.67  24.06
2.6  Line 4877 and line 4898 have the same coordinates.  (second line removed)
     A      X, Y, Z:  57.03  61.08  38.6
2.6  Line 4901 and line 4929 have the same coordinates.  (second line removed)
     A      X, Y, Z:  55.89  61.38  39.75
2.6  Line 4966 and line 5052 have the same coordinates.  (second line removed)
     A      X, Y, Z:  58.03  57.83  24.55
2.6  Line 4995 and line 5022 have the same coordinates.  (second line removed)
     A      X, Y, Z:  51.81  54.93  27.43
2.6  Line 5073 and line 5091 have the same coordinates.  (second line removed)
     A      X, Y, Z:  75.13  66.11  21.66
2.6  Line 5129 and line 5254 have the same coordinates.  (second line removed)
     A      X, Y, Z:  85.24  58.98  22.09
2.6  Line 5161 and line 5195 have the same coordinates.  (second line removed)
     A      X, Y, Z:  93.47  54.16  25.15
4.4  Line 1356 of rad 1.38526 links to 833 of rad 0.684565.  (no action taken)
     B1      X, Y, Z:  65.74  107.23  22.82
 
 


Number of type A irregularities = 106
Number of type B1 irregularities = 8
Number of type B2 irregularities = 0
Number of type C irregularities = 0
