# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\223417-6mo-GFAP-IFN-20x-cerebellum-iba1-3_1.swc.swc created with StdSwc version 1.31 on 5/20/22.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\223417-6mo-GFAP-IFN-20x-cerebellum-iba1-3_1.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  134.43  82.59  51.47
2.5  Seg length ending at pt. 2 <= 0.1 at 0.0332.  (removed)
     A       X, Y, Z:  134.44  82.62  51.46
2.5  Seg length ending at pt. 4 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  134.44  82.71  51.42
2.5  Seg length ending at pt. 86 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  132.92  94.41  53.22
2.5  Seg length ending at pt. 120 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  130.19  98.66  54.38
2.5  Seg length ending at pt. 297 <= 0.1 at 0.0854.  (removed)
     A       X, Y, Z:  118.53  95.88  61.38
2.5  Seg length ending at pt. 415 <= 0.1 at 0.0748.  (removed)
     A       X, Y, Z:  101.39  95.73  61.58
2.4  Seg length ending at pt. 669 >= 6.0 stdevs above mean at 0.9087.  (no action taken)
     B1      X, Y, Z:  132.94  94.17  54.1
2.4  Seg length ending at pt. 670 >= 6.0 stdevs above mean at 0.8448.  (no action taken)
     B1      X, Y, Z:  132.94  93.93  54.91
2.4  Seg length ending at pt. 671 >= 6.0 stdevs above mean at 0.7574.  (no action taken)
     B1      X, Y, Z:  132.92  93.77  55.65
2.5  Seg length ending at pt. 747 <= 0.1 at 0.0678.  (removed)
     A       X, Y, Z:  134.43  82.59  51.47
2.5  Seg length ending at pt. 907 <= 0.1 at 0.0755.  (removed)
     A       X, Y, Z:  146.17  79.03  43.85
2.5  Seg length ending at pt. 923 <= 0.1 at 0.0671.  (removed)
     A       X, Y, Z:  146.27  76.72  43.56
2.5  Seg length ending at pt. 1021 <= 0.1 at 0.086.  (removed)
     A       X, Y, Z:  146.55  62.72  39.13
2.5  Seg length ending at pt. 1076 <= 0.1 at 0.0714.  (removed)
     A       X, Y, Z:  146.38  61.81  39.61
2.5  Seg length ending at pt. 1088 <= 0.1 at 0.0854.  (removed)
     A       X, Y, Z:  145.67  60.37  39.42
2.5  Seg length ending at pt. 1090 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  145.59  60.25  39.37
2.4  Seg length ending at pt. 1100 >= 6.0 stdevs above mean at 0.7819.  (no action taken)
     B1      X, Y, Z:  146.3  76.68  44.34
2.5  Seg length ending at pt. 1290 <= 0.1 at 0.086.  (removed)
     A       X, Y, Z:  150.85  88.67  58.57
2.5  Seg length ending at pt. 1441 <= 0.1 at 0.0678.  (removed)
     A       X, Y, Z:  134.43  82.59  51.47
2.5  Seg length ending at pt. 1450 <= 0.1 at 0.0917.  (removed)
     A       X, Y, Z:  135.7  82.37  50.93
2.5  Seg length ending at pt. 1519 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  134.43  82.59  51.47
2.5  Seg length ending at pt. 1586 <= 0.1 at 0.0917.  (removed)
     A       X, Y, Z:  124.73  83.78  47.11
2.5  Seg length ending at pt. 1650 <= 0.1 at 0.0849.  (removed)
     A       X, Y, Z:  121.37  88.89  45.96
2.5  Seg length ending at pt. 1686 <= 0.1 at 0.0245.  (removed)
     A       X, Y, Z:  121.29  88.9  45.98
2.5  Seg length ending at pt. 1891 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  129.26  78.57  51.34
2.5  Seg length ending at pt. 1940 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  124.29  73.21  51.74
2.5  Seg length ending at pt. 2007 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  115.68  69.43  52.06
2.5  Seg length ending at pt. 2033 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  112.0  70.11  51.05
2.4  Seg length ending at pt. 2115 >= 6.0 stdevs above mean at 0.9225.  (no action taken)
     B1      X, Y, Z:  112.07  70.09  50.16
2.4  Seg length ending at pt. 2116 >= 6.0 stdevs above mean at 0.8715.  (no action taken)
     B1      X, Y, Z:  112.12  70.08  49.29
2.4  Seg length ending at pt. 2117 >= 6.0 stdevs above mean at 0.8006.  (no action taken)
     B1      X, Y, Z:  112.09  70.07  48.49
2.4  Seg length ending at pt. 2118 >= 6.0 stdevs above mean at 0.7424.  (no action taken)
     B1      X, Y, Z:  112.03  70.07  47.75
2.5  Seg length ending at pt. 2362 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  122.82  77.35  57.4
2.5  Seg length ending at pt. 2376 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  122.26  76.22  60.03
2.5  Seg length ending at pt. 2582 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  134.43  82.59  51.47
2.5  Seg length ending at pt. 3 <= 0.1 at 0.0678.  (removed)
     A       X, Y, Z:  134.44  82.65  51.44
2.6  Line 1 and line 1890 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  134.43  82.59  51.47
2.6  Line 87 and line 669 have the same coordinates.  (second line removed)
     A      X, Y, Z:  132.91  94.49  53.25
2.6  Line 121 and line 215 have the same coordinates.  (second line removed)
     A      X, Y, Z:  130.12  98.69  54.4
2.6  Line 136 and line 189 have the same coordinates.  (second line removed)
     A      X, Y, Z:  128.48  100.25  55.27
2.6  Line 148 and line 177 have the same coordinates.  (second line removed)
     A      X, Y, Z:  128.88  102.34  56.01
2.6  Line 298 and line 525 have the same coordinates.  (second line removed)
     A      X, Y, Z:  118.46  95.89  61.45
2.6  Line 416 and line 503 have the same coordinates.  (second line removed)
     A      X, Y, Z:  101.33  95.68  61.61
2.6  Line 616 and line 636 have the same coordinates.  (second line removed)
     A      X, Y, Z:  107.83  91.07  72.05
2.6  Line 692 and line 731 have the same coordinates.  (second line removed)
     A      X, Y, Z:  131.15  93.09  66.11
2.6  Line 751 and line 1181 have the same coordinates.  (second line removed)
     A      X, Y, Z:  135.19  83.09  51.14
2.6  Line 805 and line 845 have the same coordinates.  (second line removed)
     A      X, Y, Z:  140.98  86.99  44.16
2.6  Line 908 and line 1143 have the same coordinates.  (second line removed)
     A      X, Y, Z:  146.19  78.96  43.83
2.6  Line 924 and line 1100 have the same coordinates.  (second line removed)
     A      X, Y, Z:  146.25  76.66  43.56
2.6  Line 1022 and line 1072 have the same coordinates.  (second line removed)
     A      X, Y, Z:  146.53  62.63  39.12
2.6  Line 1291 and line 1410 have the same coordinates.  (second line removed)
     A      X, Y, Z:  150.93  88.69  58.62
2.6  Line 1315 and line 1381 have the same coordinates.  (second line removed)
     A      X, Y, Z:  152.85  91.43  61.92
2.6  Line 1587 and line 1611 have the same coordinates.  (second line removed)
     A      X, Y, Z:  124.66  83.79  47.07
2.6  Line 1651 and line 1687 have the same coordinates.  (second line removed)
     A      X, Y, Z:  121.3  88.92  45.97
2.6  Line 1941 and line 2343 have the same coordinates.  (second line removed)
     A      X, Y, Z:  124.23  73.19  51.78
2.6  Line 2008 and line 2120 have the same coordinates.  (second line removed)
     A      X, Y, Z:  115.62  69.43  52.01
2.6  Line 2034 and line 2115 have the same coordinates.  (second line removed)
     A      X, Y, Z:  111.92  70.11  51.07
2.6  Line 2179 and line 2282 have the same coordinates.  (second line removed)
     A      X, Y, Z:  117.1  60.88  47.44
2.6  Line 2211 and line 2223 have the same coordinates.  (second line removed)
     A      X, Y, Z:  120.14  57.86  43.13
2.6  Line 2365 and line 2478 have the same coordinates.  (second line removed)
     A      X, Y, Z:  122.69  77.15  57.81
2.6  Line 2377 and line 2422 have the same coordinates.  (second line removed)
     A      X, Y, Z:  122.23  76.16  60.09
2.6  Line 2679 and line 2738 have the same coordinates.  (second line removed)
     A      X, Y, Z:  128.8  75.92  78.38
4.4  Line 5 of rad 2.16941 links to 1 of rad 0.67.  (no action taken)
     B1      X, Y, Z:  134.44  82.83  51.37
4.4  Line 700 of rad 1.44219 links to 699 of rad 0.675465.  (no action taken)
     B1      X, Y, Z:  130.57  93.84  69.03
4.4  Line 748 of rad 2.22808 links to 1 of rad 0.67.  (no action taken)
     B1      X, Y, Z:  134.71  82.77  51.38
4.4  Line 1442 of rad 1.81638 links to 1 of rad 0.67.  (no action taken)
     B1      X, Y, Z:  134.62  82.71  51.44
4.4  Line 1520 of rad 1.6439 links to 1 of rad 0.67.  (no action taken)
     B1      X, Y, Z:  134.26  82.8  51.33
2.1  Line 1 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  134.43  82.59  51.47
 
 


Number of type A irregularities = 53
Number of type B1 irregularities = 16
Number of type B2 irregularities = 0
Number of type C irregularities = 0
