# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\221505-6mo-GFAP-IFN-20x-cerebellum-iba1-3_2.swc.swc created with StdSwc version 1.31 on 5/20/22.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\221505-6mo-GFAP-IFN-20x-cerebellum-iba1-3_2.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  187.25  110.57  64.72
4.3  Radius of line 128 at 2.91951 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  186.79  109.06  64.5
4.3  Radius of line 129 at 2.86671 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  186.63  108.77  64.54
2.5  Seg length ending at pt. 6 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  187.12  109.54  64.11
2.5  Seg length ending at pt. 126 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  187.12  109.54  64.11
2.5  Seg length ending at pt. 379 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  216.13  122.77  64.84
2.5  Seg length ending at pt. 405 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  216.13  122.77  64.84
2.5  Seg length ending at pt. 586 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  193.51  126.52  82.67
2.5  Seg length ending at pt. 591 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  192.48  127.26  82.9
2.5  Seg length ending at pt. 688 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  192.48  127.26  82.9
2.5  Seg length ending at pt. 892 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  193.51  126.52  82.67
2.5  Seg length ending at pt. 1561 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  187.25  110.57  64.72
2.5  Seg length ending at pt. 1688 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  187.44  110.39  63.92
2.7  Line 1894 of rad 0.667505 is an included side branch.  (removed)
     A      X, Y, Z:  177.12  111.79  54.48
2.6  Line 1 and line 263 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  187.25  110.57  64.72
2.6  Line 73 and line 113 have the same coordinates.  (second line removed)
     A      X, Y, Z:  185.57  91.05  53.21
2.6  Line 208 and line 216 have the same coordinates.  (second line removed)
     A      X, Y, Z:  192.15  92.01  81.09
2.6  Line 266 and line 1527 have the same coordinates.  (second line removed)
     A      X, Y, Z:  187.7  111.29  65.33
2.6  Line 300 and line 901 have the same coordinates.  (second line removed)
     A      X, Y, Z:  196.57  116.62  69.79
2.6  Line 309 and line 549 have the same coordinates.  (second line removed)
     A      X, Y, Z:  197.59  118.12  72.47
2.6  Line 335 and line 459 have the same coordinates.  (second line removed)
     A      X, Y, Z:  204.97  120.31  74.08
2.6  Line 463 and line 525 have the same coordinates.  (second line removed)
     A      X, Y, Z:  204.43  120.74  76.55
2.6  Line 630 and line 662 have the same coordinates.  (second line removed)
     A      X, Y, Z:  181.38  130.62  81.0
2.6  Line 701 and line 737 have the same coordinates.  (second line removed)
     A      X, Y, Z:  191.93  130.3  87.14
2.6  Line 806 and line 812 have the same coordinates.  (second line removed)
     A      X, Y, Z:  182.29  117.6  83.65
2.6  Line 856 and line 872 have the same coordinates.  (second line removed)
     A      X, Y, Z:  168.5  117.02  85.03
2.6  Line 931 and line 1470 have the same coordinates.  (second line removed)
     A      X, Y, Z:  205.19  111.98  66.07
2.6  Line 951 and line 1101 have the same coordinates.  (second line removed)
     A      X, Y, Z:  210.27  108.84  65.57
2.6  Line 955 and line 1036 have the same coordinates.  (second line removed)
     A      X, Y, Z:  211.26  108.91  65.53
2.6  Line 1004 and line 1014 have the same coordinates.  (second line removed)
     A      X, Y, Z:  224.94  105.4  62.08
2.6  Line 1125 and line 1450 have the same coordinates.  (second line removed)
     A      X, Y, Z:  213.48  101.81  65.97
2.6  Line 1134 and line 1391 have the same coordinates.  (second line removed)
     A      X, Y, Z:  214.88  99.75  66.51
2.6  Line 1154 and line 1327 have the same coordinates.  (second line removed)
     A      X, Y, Z:  219.83  96.61  67.28
2.6  Line 1173 and line 1282 have the same coordinates.  (second line removed)
     A      X, Y, Z:  225.13  96.62  65.96
2.6  Line 1209 and line 1266 have the same coordinates.  (second line removed)
     A      X, Y, Z:  235.77  97.34  66.31
2.6  Line 1348 and line 1365 have the same coordinates.  (second line removed)
     A      X, Y, Z:  222.42  90.73  64.96
2.6  Line 1481 and line 1503 have the same coordinates.  (second line removed)
     A      X, Y, Z:  205.95  110.58  59.74
2.6  Line 1622 and line 1671 have the same coordinates.  (second line removed)
     A      X, Y, Z:  197.64  99.76  45.96
2.6  Line 1718 and line 1726 have the same coordinates.  (second line removed)
     A      X, Y, Z:  182.05  112.82  51.04
2.6  Line 1758 and line 1876 have the same coordinates.  (second line removed)
     A      X, Y, Z:  176.06  110.09  60.8
2.6  Line 1799 and line 1868 have the same coordinates.  (second line removed)
     A      X, Y, Z:  163.86  112.9  59.88
2.6  Line 1836 and line 1866 have the same coordinates.  (second line removed)
     A      X, Y, Z:  157.5  104.04  55.45
4.4  Line 264 of rad 1.7152 links to 263 of rad 0.667505.  (no action taken)
     B1      X, Y, Z:  187.46  110.92  65.08
 
 


Number of type A irregularities = 38
Number of type B1 irregularities = 5
Number of type B2 irregularities = 0
Number of type C irregularities = 0
