# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\Casp6_WT_Neuron_5.swc.swc created with StdSwc version 1.31 on 7/20/21.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\Casp6_WT_Neuron_5.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  320.98  263.89  21.78
4.3  Radius of line 2 at 18.245 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  320.97  263.89  21.75
4.3  Radius of line 3 at 18.245 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  320.96  263.89  21.71
4.3  Radius of line 4 at 18.245 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  320.95  263.89  21.65
4.3  Radius of line 5 at 18.245 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  320.92  263.89  21.53
4.3  Radius of line 6 at 18.245 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  320.87  263.88  21.29
4.5  Radius of terminal line 7 at 18.245 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  320.76  263.87  20.8
2.5  Seg length ending at pt. 2 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  320.97  263.89  21.75
2.5  Seg length ending at pt. 4 <= 0.1 at 0.0608.  (removed)
     A       X, Y, Z:  320.95  263.89  21.65
2.4  Seg length ending at pt. 8 >= 6.0 stdevs above mean at 24.6262.  (no action taken)
     B1      X, Y, Z:  326.42  285.82  31.0
2.4  Seg length ending at pt. 18 >= 6.0 stdevs above mean at 28.2138.  (no action taken)
     B1      X, Y, Z:  334.8  285.7  32.83
2.4  Seg length ending at pt. 315 >= 6.0 stdevs above mean at 29.1131.  (no action taken)
     B1      X, Y, Z:  333.81  239.08  29.89
2.4  Seg length ending at pt. 329 >= 6.0 stdevs above mean at 20.0581.  (no action taken)
     B1      X, Y, Z:  337.37  219.53  27.16
2.4  Seg length ending at pt. 1384 >= 6.0 stdevs above mean at 18.2007.  (no action taken)
     B1      X, Y, Z:  309.36  277.61  24.62
2.4  Seg length ending at pt. 1582 >= 6.0 stdevs above mean at 29.627.  (no action taken)
     B1      X, Y, Z:  349.31  272.56  21.78
2.4  Seg length ending at pt. 1796 >= 6.0 stdevs above mean at 21.6275.  (no action taken)
     B1      X, Y, Z:  321.57  245.41  33.0
2.5  Seg length ending at pt. 3 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  320.96  263.89  21.71
2.4  Seg length ending at pt. 82 >= 6.0 stdevs above mean at 14.4875.  (no action taken)
     B1      X, Y, Z:  338.25  299.73  33.9
1.2  Line 82 of type 2 links to incorrect type 3.  (no action taken)
     B1      X, Y, Z:  338.25  299.73  33.9
2.7  Line 7 of rad 18.245 is an included side branch.  (removed)
     A      X, Y, Z:  320.76  263.87  20.8
4.4  Line 1801 of rad 1.0961 links to 1800 of rad 0.42491.  (no action taken)
     B1      X, Y, Z:  298.82  233.91  32.0
4.4  Line 1808 of rad 0.85797 links to 1807 of rad 0.42492.  (no action taken)
     B1      X, Y, Z:  267.92  234.41  29.0
4.4  Line 1825 of rad 1.5811 links to 1824 of rad 0.53765.  (no action taken)
     B1      X, Y, Z:  196.5  207.25  27.0
4.4  Line 1834 of rad 1.3877 links to 1833 of rad 0.58962.  (no action taken)
     B1      X, Y, Z:  168.06  184.37  25.0
4.4  Line 1851 of rad 1.1785 links to 1850 of rad 0.41666.  (no action taken)
     B1      X, Y, Z:  291.32  253.83  39.0
4.4  Line 1869 of rad 1.4045 links to 1868 of rad 0.61872.  (no action taken)
     B1      X, Y, Z:  213.0  309.18  53.0
4.4  Line 1887 of rad 1.522 links to 1886 of rad 0.58962.  (no action taken)
     B1      X, Y, Z:  269.87  254.81  43.0
4.4  Line 1899 of rad 0.98821 links to 1898 of rad 0.375.  (no action taken)
     B1      X, Y, Z:  210.18  235.06  55.0
4.4  Line 1913 of rad 1.6226 links to 1912 of rad 0.51539.  (no action taken)
     B1      X, Y, Z:  150.56  230.31  53.0
2.1  Line 1 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  320.98  263.89  21.78
 
 


Number of type A irregularities = 4
Number of type B1 irregularities = 26
Number of type B2 irregularities = 0
Number of type C irregularities = 0
