# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\Striatum-PV-EGFP-1.ims.swc.swc created with StdSwc version 1.31 on 6/29/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\Striatum-PV-EGFP-1.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  196.67  165.65  5.11
4.5  Radius of terminal line 186 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  252.58  183.8  6.72
4.5  Radius of terminal line 225 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  220.55  152.89  -2.02
4.5  Radius of terminal line 252 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  205.66  154.11  -0.36
4.5  Radius of terminal line 318 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  226.53  176.56  2.91
4.5  Radius of terminal line 449 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  156.24  180.63  2.36
4.5  Radius of terminal line 486 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  173.81  187.77  6.72
4.5  Radius of terminal line 570 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  167.51  150.21  -1.45
4.5  Radius of terminal line 615 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  180.92  173.28  6.18
4.5  Radius of terminal line 749 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  205.23  206.02  6.18
4.5  Radius of terminal line 763 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  206.15  188.77  6.72
4.5  Radius of terminal line 828 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  175.86  189.65  1.81
4.3  Radius of line 832 at 0.591 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  199.61  167.42  6.38
4.3  Radius of line 833 at 0.652 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  199.72  167.8  6.41
4.3  Radius of line 834 at 0.669 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  199.8  168.19  6.42
4.3  Radius of line 835 at 0.666 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  199.93  168.54  6.45
4.3  Radius of line 836 at 0.619 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  200.12  168.85  6.49
4.5  Radius of terminal line 910 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  213.6  189.04  4.54
4.5  Radius of terminal line 926 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  208.18  184.35  -1.48
4.5  Radius of terminal line 948 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  208.73  179.62  -0.38
4.5  Radius of terminal line 1066 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  222.18  136.9  0.55
4.5  Radius of terminal line 1084 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  204.73  152.25  -0.9
4.5  Radius of terminal line 1157 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  197.79  141.77  -1.45
4.5  Radius of terminal line 1174 at 0.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  192.01  168.98  5.85
2.5  Seg length ending at pt. 2 <= 0.1 at 0.0648.  (removed)
     A       X, Y, Z:  196.72  165.66  5.15
2.4  Seg length ending at pt. 320 >= 6.0 stdevs above mean at 0.9945.  (no action taken)
     B1      X, Y, Z:  196.6  164.86  5.71
2.4  Seg length ending at pt. 617 >= 6.0 stdevs above mean at 1.1526.  (no action taken)
     B1      X, Y, Z:  197.56  166.07  5.71
2.5  Seg length ending at pt. 949 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  196.67  165.65  5.11
2.4  Seg length ending at pt. 950 >= 6.0 stdevs above mean at 1.1544.  (no action taken)
     B1      X, Y, Z:  197.64  165.51  5.72
2.4  Seg length ending at pt. 1067 >= 6.0 stdevs above mean at 0.9304.  (no action taken)
     B1      X, Y, Z:  202.37  149.76  4.47
2.4  Seg length ending at pt. 1085 >= 6.0 stdevs above mean at 0.8322.  (no action taken)
     B1      X, Y, Z:  197.43  164.73  5.92
2.5  Seg length ending at pt. 1158 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  196.67  165.65  5.11
2.4  Seg length ending at pt. 1159 >= 6.0 stdevs above mean at 0.9192.  (no action taken)
     B1      X, Y, Z:  196.43  164.97  5.68
2.6  Line 1 and line 319 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  196.67  165.65  5.11
2.6  Line 1 and line 616 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  196.67  165.65  5.11
2.6  Line 319 and line 616 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  196.67  165.65  5.11
2.1  Line 1 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  196.67  165.65  5.11
 
 


Number of type A irregularities = 3
Number of type B1 irregularities = 34
Number of type B2 irregularities = 0
Number of type C irregularities = 0
