# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\M9Neuron6Imaris.ims.swc.swc created with StdSwc version 1.31 on 12/11/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\M9Neuron6Imaris.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  88.13  54.77  4.26
4.3  Radius of line 2 at 3.657 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.1  54.78  4.27
4.3  Radius of line 3 at 3.657 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.08  54.79  4.28
4.3  Radius of line 4 at 3.657 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.03  54.81  4.3
4.3  Radius of line 5 at 3.657 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  87.93  54.85  4.34
4.3  Radius of line 6 at 3.657 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  87.74  54.93  4.41
4.3  Radius of line 65 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.13  54.77  4.26
4.3  Radius of line 66 at 3.657 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.38  55.22  4.4
4.3  Radius of line 153 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.13  54.77  4.26
4.3  Radius of line 154 at 3.682 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  87.98  55.26  4.42
4.3  Radius of line 290 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.13  54.77  4.26
4.3  Radius of line 291 at 3.657 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.31  54.32  4.25
4.3  Radius of line 477 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.13  54.77  4.26
4.3  Radius of line 478 at 3.657 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  87.85  54.4  4.29
4.3  Radius of line 1171 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.13  54.77  4.26
4.3  Radius of line 1172 at 2.3 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.36  54.92  4.33
4.5  Radius of terminal line 4053 at 0.22 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  204.79  30.46  10.0
4.5  Radius of terminal line 4521 at 0.22 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  222.9  33.14  7.99
2.5  Seg length ending at pt. 2 <= 0.1 at 0.0332.  (removed)
     A       X, Y, Z:  88.1  54.78  4.27
2.5  Seg length ending at pt. 4 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  88.03  54.81  4.3
2.4  Seg length ending at pt. 66 >= 6.0 stdevs above mean at 0.5335.  (no action taken)
     B1      X, Y, Z:  88.38  55.22  4.4
2.5  Seg length ending at pt. 153 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  88.13  54.77  4.26
2.4  Seg length ending at pt. 154 >= 6.0 stdevs above mean at 0.5005.  (no action taken)
     B1      X, Y, Z:  87.98  55.26  4.42
2.5  Seg length ending at pt. 290 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  88.13  54.77  4.26
2.4  Seg length ending at pt. 291 >= 6.0 stdevs above mean at 0.5241.  (no action taken)
     B1      X, Y, Z:  88.31  54.32  4.25
2.5  Seg length ending at pt. 477 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  88.13  54.77  4.26
2.5  Seg length ending at pt. 831 <= 0.1 at 0.0964.  (removed)
     A       X, Y, Z:  58.87  46.99  5.99
2.5  Seg length ending at pt. 855 <= 0.1 at 0.0755.  (removed)
     A       X, Y, Z:  58.74  47.06  5.89
2.5  Seg length ending at pt. 871 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  58.75  47.06  5.9
2.5  Seg length ending at pt. 1171 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  88.13  54.77  4.26
2.5  Seg length ending at pt. 1399 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  91.36  50.5  8.07
2.5  Seg length ending at pt. 1401 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  91.38  50.51  8.09
2.5  Seg length ending at pt. 1403 <= 0.1 at 0.0883.  (removed)
     A       X, Y, Z:  91.49  50.55  8.16
2.5  Seg length ending at pt. 1408 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  91.48  50.54  8.16
2.5  Seg length ending at pt. 1575 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  91.17  41.53  8.74
2.5  Seg length ending at pt. 1577 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  91.14  41.53  8.73
2.5  Seg length ending at pt. 1579 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  91.01  41.51  8.66
2.5  Seg length ending at pt. 1646 <= 0.1 at 0.0332.  (removed)
     A       X, Y, Z:  91.24  40.88  8.75
2.5  Seg length ending at pt. 1648 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  91.28  40.9  8.86
2.5  Seg length ending at pt. 1654 <= 0.1 at 0.097.  (removed)
     A       X, Y, Z:  91.29  40.91  8.88
2.5  Seg length ending at pt. 1698 <= 0.1 at 0.0906.  (removed)
     A       X, Y, Z:  91.27  40.45  8.57
2.5  Seg length ending at pt. 1721 <= 0.1 at 0.04.  (removed)
     A       X, Y, Z:  91.28  39.51  8.49
2.5  Seg length ending at pt. 1723 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  91.26  39.54  8.36
2.5  Seg length ending at pt. 1864 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  87.35  30.17  7.15
2.5  Seg length ending at pt. 1937 <= 0.1 at 0.0412.  (removed)
     A       X, Y, Z:  87.92  30.86  7.28
2.5  Seg length ending at pt. 2028 <= 0.1 at 0.0985.  (removed)
     A       X, Y, Z:  92.81  32.36  6.78
2.5  Seg length ending at pt. 2046 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  92.88  32.38  6.61
2.5  Seg length ending at pt. 2048 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  92.91  32.38  6.63
2.5  Seg length ending at pt. 2050 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  93.05  32.4  6.69
2.5  Seg length ending at pt. 2685 <= 0.1 at 0.0922.  (removed)
     A       X, Y, Z:  139.45  46.18  6.08
2.5  Seg length ending at pt. 2832 <= 0.1 at 0.0374.  (removed)
     A       X, Y, Z:  150.95  42.5  6.92
2.5  Seg length ending at pt. 2834 <= 0.1 at 0.086.  (removed)
     A       X, Y, Z:  151.0  42.6  6.98
2.5  Seg length ending at pt. 2921 <= 0.1 at 0.0825.  (removed)
     A       X, Y, Z:  151.58  42.19  6.92
2.5  Seg length ending at pt. 2935 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  151.83  42.09  6.95
2.5  Seg length ending at pt. 2937 <= 0.1 at 0.0911.  (removed)
     A       X, Y, Z:  151.81  42.07  6.81
2.5  Seg length ending at pt. 2986 <= 0.1 at 0.0424.  (removed)
     A       X, Y, Z:  152.31  42.01  6.93
2.5  Seg length ending at pt. 2988 <= 0.1 at 0.0849.  (removed)
     A       X, Y, Z:  152.34  42.04  6.81
2.5  Seg length ending at pt. 3010 <= 0.1 at 0.1.  (removed)
     A       X, Y, Z:  152.24  41.92  6.97
2.5  Seg length ending at pt. 3035 <= 0.1 at 0.0283.  (removed)
     A       X, Y, Z:  153.02  42.01  6.94
2.5  Seg length ending at pt. 3037 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  153.01  42.07  6.98
2.5  Seg length ending at pt. 3108 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  153.61  40.75  6.0
2.5  Seg length ending at pt. 3128 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  155.96  43.12  6.16
2.5  Seg length ending at pt. 3144 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  155.96  43.12  6.16
2.5  Seg length ending at pt. 3288 <= 0.1 at 0.0894.  (removed)
     A       X, Y, Z:  157.27  38.22  5.92
2.5  Seg length ending at pt. 3318 <= 0.1 at 0.06.  (removed)
     A       X, Y, Z:  158.17  36.59  5.65
2.5  Seg length ending at pt. 3472 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  161.09  41.17  7.16
2.5  Seg length ending at pt. 3527 <= 0.1 at 0.0866.  (removed)
     A       X, Y, Z:  164.01  37.85  7.24
2.5  Seg length ending at pt. 3646 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  173.6  37.39  7.9
2.5  Seg length ending at pt. 3730 <= 0.1 at 0.0906.  (removed)
     A       X, Y, Z:  179.09  35.66  8.16
2.5  Seg length ending at pt. 3812 <= 0.1 at 0.0762.  (removed)
     A       X, Y, Z:  186.51  34.0  8.24
2.5  Seg length ending at pt. 3919 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  195.95  33.41  8.76
2.5  Seg length ending at pt. 3921 <= 0.1 at 0.098.  (removed)
     A       X, Y, Z:  195.83  33.36  8.68
2.5  Seg length ending at pt. 4044 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  203.72  30.69  9.98
2.5  Seg length ending at pt. 4193 <= 0.1 at 0.06.  (removed)
     A       X, Y, Z:  207.21  34.73  8.97
2.5  Seg length ending at pt. 4225 <= 0.1 at 0.0949.  (removed)
     A       X, Y, Z:  206.93  33.38  9.6
2.5  Seg length ending at pt. 4227 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  206.92  33.21  9.68
2.5  Seg length ending at pt. 4276 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  209.98  33.69  8.14
2.5  Seg length ending at pt. 4604 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  226.97  33.11  8.08
2.5  Seg length ending at pt. 4678 <= 0.1 at 0.0954.  (removed)
     A       X, Y, Z:  234.43  32.89  7.91
2.5  Seg length ending at pt. 4711 <= 0.1 at 0.0917.  (removed)
     A       X, Y, Z:  234.18  34.61  8.05
2.5  Seg length ending at pt. 4766 <= 0.1 at 0.0825.  (removed)
     A       X, Y, Z:  238.71  32.5  7.71
2.5  Seg length ending at pt. 4846 <= 0.1 at 0.098.  (removed)
     A       X, Y, Z:  241.81  33.56  7.96
2.5  Seg length ending at pt. 4929 <= 0.1 at 0.0911.  (removed)
     A       X, Y, Z:  245.61  35.18  8.13
2.5  Seg length ending at pt. 4959 <= 0.1 at 0.0762.  (removed)
     A       X, Y, Z:  247.98  34.94  8.09
2.5  Seg length ending at pt. 4961 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  247.98  35.07  8.23
2.5  Seg length ending at pt. 4983 <= 0.1 at 0.0412.  (removed)
     A       X, Y, Z:  113.27  49.65  4.89
2.5  Seg length ending at pt. 3 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  88.08  54.79  4.28
2.5  Seg length ending at pt. 1400 <= 0.1 at 0.0245.  (removed)
     A       X, Y, Z:  91.37  50.51  8.08
2.5  Seg length ending at pt. 1576 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  91.16  41.53  8.74
2.5  Seg length ending at pt. 1647 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  91.26  40.89  8.79
2.5  Seg length ending at pt. 1722 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  91.27  39.52  8.45
2.5  Seg length ending at pt. 2047 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  92.89  32.38  6.62
2.5  Seg length ending at pt. 2833 <= 0.1 at 0.0781.  (removed)
     A       X, Y, Z:  150.97  42.53  6.94
2.5  Seg length ending at pt. 2987 <= 0.1 at 0.0849.  (removed)
     A       X, Y, Z:  152.32  42.02  6.89
2.5  Seg length ending at pt. 3036 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  153.02  42.03  6.95
2.5  Seg length ending at pt. 1402 <= 0.1 at 0.086.  (removed)
     A       X, Y, Z:  91.42  50.53  8.11
2.5  Seg length ending at pt. 2049 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  92.96  32.39  6.65
2.6  Line 1 and line 65 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  88.13  54.77  4.26
2.6  Line 1409 and line 1437 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  91.59  50.61  8.21
2.6  Line 1410 and line 1438 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  91.68  50.68  8.23
2.6  Line 1419 and line 1457 have the same coordinates.  (second line removed)
     A      X, Y, Z:  91.5  50.57  8.17
2.6  Line 1431 and line 1468 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  91.42  51.95  8.71
2.6  Line 1726 and line 1731 have the same coordinates.  (second line removed)
     A      X, Y, Z:  91.31  39.59  8.38
2.6  Line 1943 and line 1974 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  87.96  30.79  7.24
2.6  Line 1944 and line 1975 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  88.09  30.73  7.19
2.6  Line 2064 and line 2078 have the same coordinates.  (second line removed)
     A      X, Y, Z:  93.0  32.38  6.67
2.6  Line 2848 and line 2867 have the same coordinates.  (second line removed)
     A      X, Y, Z:  150.99  42.62  6.99
2.6  Line 2849 and line 2867 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  151.0  42.75  7.07
2.6  Line 2850 and line 2868 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  150.98  42.87  7.14
2.6  Line 2851 and line 2869 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  150.94  42.99  7.2
2.6  Line 3129 and line 3146 have the same coordinates.  (second line removed)
     A      X, Y, Z:  155.82  43.16  6.08
2.6  Line 3130 and line 3146 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  155.71  43.24  6.07
2.6  Line 3132 and line 3148 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  155.6  43.48  6.12
2.6  Line 3133 and line 3149 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  155.56  43.6  6.16
2.6  Line 3647 and line 3658 have the same coordinates.  (second line removed)
     A      X, Y, Z:  173.62  37.47  7.94
4.4  Line 65 of rad 8.0 links to 5 of rad 3.657.  (no action taken)
     B1      X, Y, Z:  88.13  54.77  4.26
4.4  Line 4522 of rad 0.4 links to 4518 of rad 0.144.  (no action taken)
     B1      X, Y, Z:  223.09  32.86  8.24
2.1  Line 1 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  88.13  54.77  4.26
2.1  Line 830 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  58.92  47.01  5.91
2.1  Line 854 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  58.76  47.04  5.82
2.1  Line 1398 has 6 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  91.35  50.5  8.07
2.1  Line 1574 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  91.18  41.53  8.75
2.1  Line 1645 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  91.23  40.87  8.72
2.1  Line 1697 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  91.3  40.42  8.65
2.1  Line 1720 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  91.28  39.51  8.53
2.1  Line 1863 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  87.39  30.21  7.16
2.1  Line 1936 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  87.89  30.88  7.3
2.1  Line 2045 has 6 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  92.87  32.38  6.61
2.1  Line 2684 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  139.45  46.12  6.15
2.1  Line 2831 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  150.94  42.47  6.9
2.1  Line 2920 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  151.6  42.19  7.0
2.1  Line 2934 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  151.83  42.1  7.0
2.1  Line 2985 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  152.3  42.0  6.97
2.1  Line 3034 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  153.02  41.99  6.92
2.1  Line 3471 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  161.04  41.15  7.14
2.1  Line 3645 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  173.59  37.31  7.86
2.1  Line 3729 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  179.08  35.66  8.25
2.1  Line 3811 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  186.48  33.93  8.24
2.1  Line 3918 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  195.99  33.41  8.81
2.1  Line 4192 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  207.25  34.69  8.95
2.1  Line 4275 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  209.97  33.62  8.1
2.1  Line 4603 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  226.96  33.05  8.09
2.1  Line 4677 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  234.4  32.98  7.92
2.1  Line 4928 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  245.56  35.11  8.1
2.1  Line 4982 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  113.29  49.67  4.86
 
 


Number of type A irregularities = 82
Number of type B1 irregularities = 63
Number of type B2 irregularities = 0
Number of type C irregularities = 0
