# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\M9Neuron1Imaris.ims.swc.swc created with StdSwc version 1.31 on 12/11/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\M9Neuron1Imaris.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  88.7  96.59  7.07
4.3  Radius of line 2 at 2.3 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.52  96.5  6.86
4.3  Radius of line 3 at 1.469 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.49  96.48  6.84
4.3  Radius of line 4 at 1.469 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.46  96.47  6.83
4.3  Radius of line 5 at 1.469 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.41  96.43  6.79
4.3  Radius of line 6 at 1.469 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.3  96.37  6.71
4.3  Radius of line 7 at 0.803 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.09  96.2  6.63
4.3  Radius of line 739 at 1.469 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  89.11  96.67  6.79
4.3  Radius of line 740 at 0.803 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  89.48  96.72  6.74
4.5  Radius of terminal line 949 at 0.13 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  130.18  109.72  8.01
4.3  Radius of line 1389 at 1.469 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.56  96.94  6.83
4.3  Radius of line 1390 at 0.803 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.51  97.25  6.81
4.3  Radius of line 2638 at 1.469 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.83  96.98  6.83
4.3  Radius of line 2639 at 0.803 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  89.04  97.29  6.81
4.3  Radius of line 3040 at 1.469 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.3  96.75  6.79
4.3  Radius of line 3041 at 0.803 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  88.04  96.86  6.74
2.5  Seg length ending at pt. 3 <= 0.1 at 0.0412.  (removed)
     A       X, Y, Z:  88.49  96.48  6.84
2.5  Seg length ending at pt. 5 <= 0.1 at 0.0755.  (removed)
     A       X, Y, Z:  88.41  96.43  6.79
2.4  Seg length ending at pt. 739 >= 6.0 stdevs above mean at 0.6812.  (no action taken)
     B1      X, Y, Z:  89.11  96.67  6.79
2.5  Seg length ending at pt. 930 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  126.55  108.1  7.89
2.5  Seg length ending at pt. 1142 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  107.0  94.29  6.99
2.5  Seg length ending at pt. 1519 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  97.31  124.46  6.04
2.5  Seg length ending at pt. 1803 <= 0.1 at 0.0985.  (removed)
     A       X, Y, Z:  91.98  122.41  7.32
2.5  Seg length ending at pt. 1859 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  88.71  110.62  6.66
2.5  Seg length ending at pt. 1876 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  88.59  110.48  8.66
2.5  Seg length ending at pt. 2332 <= 0.1 at 0.0995.  (removed)
     A       X, Y, Z:  88.63  116.02  8.94
2.5  Seg length ending at pt. 2358 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  88.25  120.4  10.27
2.5  Seg length ending at pt. 2360 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  88.24  120.48  10.24
2.4  Seg length ending at pt. 2638 >= 6.0 stdevs above mean at 0.5722.  (no action taken)
     B1      X, Y, Z:  88.83  96.98  6.83
2.5  Seg length ending at pt. 2698 <= 0.1 at 0.0583.  (removed)
     A       X, Y, Z:  94.78  108.06  8.18
2.5  Seg length ending at pt. 2722 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  96.4  112.4  8.53
2.5  Seg length ending at pt. 2752 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  96.31  112.36  8.48
2.5  Seg length ending at pt. 2904 <= 0.1 at 0.0995.  (removed)
     A       X, Y, Z:  94.97  105.61  8.4
2.5  Seg length ending at pt. 2906 <= 0.1 at 0.098.  (removed)
     A       X, Y, Z:  95.14  105.53  8.48
2.5  Seg length ending at pt. 4 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  88.46  96.47  6.83
2.5  Seg length ending at pt. 2359 <= 0.1 at 0.0548.  (removed)
     A       X, Y, Z:  88.24  120.42  10.26
2.6  Line 2387 and line 2402 have the same coordinates.  (second line removed)
     A      X, Y, Z:  88.16  120.3  10.19
2.6  Line 2388 and line 2402 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  88.06  120.23  10.14
4.4  Line 2 of rad 2.3 links to 1 of rad 0.125.  (no action taken)
     B1      X, Y, Z:  88.52  96.5  6.86
2.1  Line 2 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  88.52  96.5  6.86
2.1  Line 929 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  126.51  108.06  7.88
2.1  Line 1518 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  97.29  124.4  6.04
2.1  Line 1858 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  88.67  110.63  6.59
2.1  Line 2331 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  88.6  115.93  8.91
2.1  Line 2357 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  88.25  120.37  10.28
2.1  Line 2697 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  94.75  108.01  8.18
2.1  Line 2721 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  96.38  112.34  8.52
 
 


Number of type A irregularities = 19
Number of type B1 irregularities = 28
Number of type B2 irregularities = 0
Number of type C irregularities = 0
