# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\M5Neuron4Imaris.ims.swc.swc created with StdSwc version 1.31 on 12/11/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\M5Neuron4Imaris.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  86.29  44.12  8.07
4.3  Radius of line 2 at 4.443 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  86.27  43.97  8.04
4.3  Radius of line 3 at 4.443 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  86.26  43.81  8.01
4.3  Radius of line 4 at 4.443 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  86.23  43.51  7.95
4.3  Radius of line 5 at 1.903 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  86.09  43.16  7.84
4.3  Radius of line 63 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  86.29  44.12  8.07
4.3  Radius of line 64 at 4.068 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  85.75  43.96  7.9
4.3  Radius of line 203 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  86.29  44.12  8.07
4.3  Radius of line 204 at 2.293 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  86.81  44.06  8.27
4.5  Radius of terminal line 677 at 0.259 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  122.53  48.96  14.61
4.3  Radius of line 1288 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  86.29  44.12  8.07
4.3  Radius of line 1289 at 4.443 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  86.56  44.29  8.25
4.3  Radius of line 1290 at 1.903 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  86.8  44.54  8.42
4.5  Radius of terminal line 1711 at 0.274 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.68  77.81  12.74
4.5  Radius of terminal line 1830 at 0.188 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  101.89  81.08  17.89
2.4  Seg length ending at pt. 64 >= 6.0 stdevs above mean at 0.5883.  (no action taken)
     B1      X, Y, Z:  85.75  43.96  7.9
2.5  Seg length ending at pt. 115 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  78.2  41.19  6.07
2.5  Seg length ending at pt. 117 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  78.21  41.07  6.2
2.5  Seg length ending at pt. 242 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  93.67  42.4  13.18
2.5  Seg length ending at pt. 536 <= 0.1 at 0.0245.  (removed)
     A       X, Y, Z:  115.81  44.34  11.67
2.5  Seg length ending at pt. 538 <= 0.1 at 0.0458.  (removed)
     A       X, Y, Z:  115.83  44.31  11.6
2.5  Seg length ending at pt. 601 <= 0.1 at 0.0458.  (removed)
     A       X, Y, Z:  117.55  44.93  12.23
2.5  Seg length ending at pt. 603 <= 0.1 at 0.097.  (removed)
     A       X, Y, Z:  117.68  44.98  12.26
2.5  Seg length ending at pt. 650 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  120.82  47.29  13.88
2.5  Seg length ending at pt. 1288 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  86.29  44.12  8.07
2.5  Seg length ending at pt. 1736 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  96.4  79.19  13.8
2.5  Seg length ending at pt. 1823 <= 0.1 at 0.0707.  (removed)
     A       X, Y, Z:  101.7  81.07  17.77
2.5  Seg length ending at pt. 1956 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  94.38  84.85  11.24
2.5  Seg length ending at pt. 1976 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  95.59  86.84  12.41
2.5  Seg length ending at pt. 1978 <= 0.1 at 0.0361.  (removed)
     A       X, Y, Z:  95.58  86.86  12.37
2.5  Seg length ending at pt. 2161 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  91.14  89.62  10.25
2.5  Seg length ending at pt. 2528 <= 0.1 at 0.0592.  (removed)
     A       X, Y, Z:  78.31  136.24  10.19
2.5  Seg length ending at pt. 2615 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  76.64  141.64  9.88
2.5  Seg length ending at pt. 2690 <= 0.1 at 0.0332.  (removed)
     A       X, Y, Z:  76.34  146.07  9.25
2.5  Seg length ending at pt. 2692 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  76.35  146.16  9.27
2.5  Seg length ending at pt. 2920 <= 0.1 at 0.06.  (removed)
     A       X, Y, Z:  70.17  157.14  9.79
2.5  Seg length ending at pt. 2992 <= 0.1 at 0.0678.  (removed)
     A       X, Y, Z:  66.67  163.92  9.95
2.5  Seg length ending at pt. 3084 <= 0.1 at 0.02.  (removed)
     A       X, Y, Z:  63.66  167.97  9.79
2.5  Seg length ending at pt. 3086 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  63.64  168.01  9.79
2.5  Seg length ending at pt. 3142 <= 0.1 at 0.0648.  (removed)
     A       X, Y, Z:  62.87  169.56  9.82
2.5  Seg length ending at pt. 3324 <= 0.1 at 0.049.  (removed)
     A       X, Y, Z:  57.59  177.61  8.8
2.5  Seg length ending at pt. 3326 <= 0.1 at 0.0995.  (removed)
     A       X, Y, Z:  57.63  177.74  8.84
2.5  Seg length ending at pt. 3385 <= 0.1 at 0.0837.  (removed)
     A       X, Y, Z:  55.36  178.85  8.88
2.5  Seg length ending at pt. 3428 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  53.19  182.25  8.48
2.5  Seg length ending at pt. 3723 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  67.68  161.64  9.64
2.5  Seg length ending at pt. 3728 <= 0.1 at 0.0539.  (removed)
     A       X, Y, Z:  67.77  161.43  9.62
2.5  Seg length ending at pt. 3827 <= 0.1 at 0.0608.  (removed)
     A       X, Y, Z:  90.28  91.88  10.32
2.5  Seg length ending at pt. 3859 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  92.58  77.1  12.54
2.4  Seg length ending at pt. 3864 >= 6.0 stdevs above mean at 7.3721.  (no action taken)
     B1      X, Y, Z:  92.79  77.07  12.5
2.5  Seg length ending at pt. 537 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  115.82  44.33  11.64
2.5  Seg length ending at pt. 602 <= 0.1 at 0.0906.  (removed)
     A       X, Y, Z:  117.59  44.95  12.24
2.5  Seg length ending at pt. 606 <= 0.1 at 0.0548.  (removed)
     A       X, Y, Z:  117.46  44.9  12.2
2.5  Seg length ending at pt. 1977 <= 0.1 at 0.0245.  (removed)
     A       X, Y, Z:  95.58  86.84  12.4
2.5  Seg length ending at pt. 2691 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  76.34  146.1  9.26
2.5  Seg length ending at pt. 3085 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  63.65  167.98  9.79
2.5  Seg length ending at pt. 3325 <= 0.1 at 0.0906.  (removed)
     A       X, Y, Z:  57.6  177.65  8.81
2.7  Line 677 of rad 0.259 is an included side branch.  (removed)
     A      X, Y, Z:  122.53  48.96  14.61
2.6  Line 1 and line 63 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  86.29  44.12  8.07
2.6  Line 1 and line 203 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  86.29  44.12  8.07
2.6  Line 63 and line 203 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  86.29  44.12  8.07
4.4  Line 1396 of rad 0.39 links to 1391 of rad 0.185.  (no action taken)
     B1      X, Y, Z:  86.06  61.25  10.98
4.4  Line 2874 of rad 0.39 links to 2871 of rad 0.185.  (no action taken)
     B1      X, Y, Z:  70.69  155.11  9.51
4.4  Line 3864 of rad 0.533 links to 3858 of rad 0.125.  (no action taken)
     B1      X, Y, Z:  92.79  77.07  12.5
2.1  Line 241 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  93.66  42.37  13.14
2.1  Line 535 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  115.8  44.35  11.69
2.1  Line 600 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  117.51  44.92  12.21
2.1  Line 1735 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  96.35  79.25  13.82
2.1  Line 1822 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  101.69  81.14  17.77
2.1  Line 1955 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  94.37  84.79  11.23
2.1  Line 1975 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  95.59  86.83  12.42
2.1  Line 2160 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  91.21  89.66  10.24
2.1  Line 2527 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  78.34  136.19  10.2
2.1  Line 2614 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  76.57  141.63  9.86
2.1  Line 2689 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  76.33  146.04  9.24
2.1  Line 2919 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  70.11  157.14  9.79
2.1  Line 2991 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  66.7  163.86  9.94
2.1  Line 3083 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  63.66  167.95  9.79
2.1  Line 3141 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  62.82  169.57  9.86
2.1  Line 3323 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  57.57  177.57  8.78
2.1  Line 3384 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  55.39  178.91  8.83
 
 


Number of type A irregularities = 40
Number of type B1 irregularities = 40
Number of type B2 irregularities = 0
Number of type C irregularities = 0
