# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\M5Neuron3Imaris.ims.swc.swc created with StdSwc version 1.31 on 12/11/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\M5Neuron3Imaris.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  107.32  206.67  14.38
4.3  Radius of line 2 at 3.823 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.41  206.6  14.35
4.3  Radius of line 3 at 3.823 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.5  206.53  14.32
4.3  Radius of line 4 at 3.823 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.67  206.39  14.26
4.3  Radius of line 201 at 10.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.32  206.67  14.38
4.3  Radius of line 202 at 3.823 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.08  207.12  14.32
4.3  Radius of line 488 at 10.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.32  206.67  14.38
4.3  Radius of line 489 at 3.823 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.49  207.05  14.28
4.3  Radius of line 1413 at 10.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.32  206.67  14.38
4.3  Radius of line 1414 at 2.8 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.1  206.3  14.34
4.5  Radius of terminal line 6083 at 0.659 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  127.65  110.53  20.18
2.5  Seg length ending at pt. 152 <= 0.1 at 0.0964.  (removed)
     A       X, Y, Z:  127.67  188.15  13.59
2.5  Seg length ending at pt. 172 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  130.35  184.94  13.38
2.5  Seg length ending at pt. 875 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  135.87  224.34  16.84
2.5  Seg length ending at pt. 877 <= 0.1 at 0.0447.  (removed)
     A       X, Y, Z:  135.81  224.37  16.84
2.5  Seg length ending at pt. 1303 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  169.66  249.66  22.97
2.5  Seg length ending at pt. 1305 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  169.66  249.66  22.98
2.5  Seg length ending at pt. 1307 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  169.68  249.7  23.01
2.5  Seg length ending at pt. 1372 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  170.16  244.75  22.12
2.5  Seg length ending at pt. 1413 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  107.32  206.67  14.38
2.5  Seg length ending at pt. 1417 <= 0.1 at 0.0854.  (removed)
     A       X, Y, Z:  106.41  206.15  14.36
2.4  Seg length ending at pt. 1419 >= 6.0 stdevs above mean at 0.6899.  (no action taken)
     B1      X, Y, Z:  106.46  206.77  14.42
2.5  Seg length ending at pt. 1544 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  102.49  228.23  19.68
2.5  Seg length ending at pt. 1627 <= 0.1 at 0.0762.  (removed)
     A       X, Y, Z:  101.65  234.23  19.89
2.5  Seg length ending at pt. 1690 <= 0.1 at 0.0361.  (removed)
     A       X, Y, Z:  102.95  238.16  20.8
2.5  Seg length ending at pt. 1692 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  102.89  238.27  20.79
2.5  Seg length ending at pt. 1807 <= 0.1 at 0.0361.  (removed)
     A       X, Y, Z:  111.2  242.98  21.37
2.5  Seg length ending at pt. 1809 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  111.19  243.02  21.47
2.5  Seg length ending at pt. 1980 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  120.96  248.2  22.76
2.5  Seg length ending at pt. 2002 <= 0.1 at 0.0721.  (removed)
     A       X, Y, Z:  121.48  248.36  22.56
2.5  Seg length ending at pt. 2157 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  91.31  185.69  19.12
2.5  Seg length ending at pt. 2753 <= 0.1 at 0.0424.  (removed)
     A       X, Y, Z:  57.96  192.89  13.83
2.5  Seg length ending at pt. 2755 <= 0.1 at 0.0854.  (removed)
     A       X, Y, Z:  57.94  192.99  13.93
2.5  Seg length ending at pt. 3053 <= 0.1 at 0.0374.  (removed)
     A       X, Y, Z:  91.41  224.21  14.27
2.5  Seg length ending at pt. 3055 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  91.48  224.29  14.25
2.5  Seg length ending at pt. 3138 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  86.9  230.67  17.75
2.5  Seg length ending at pt. 3140 <= 0.1 at 0.0374.  (removed)
     A       X, Y, Z:  86.94  230.69  17.77
2.5  Seg length ending at pt. 3175 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  86.74  230.74  18.03
2.5  Seg length ending at pt. 3249 <= 0.1 at 0.0332.  (removed)
     A       X, Y, Z:  81.82  233.06  19.23
2.5  Seg length ending at pt. 3251 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  81.86  233.16  19.27
2.5  Seg length ending at pt. 3271 <= 0.1 at 0.0877.  (removed)
     A       X, Y, Z:  81.54  233.02  19.32
2.5  Seg length ending at pt. 3865 <= 0.1 at 0.0671.  (removed)
     A       X, Y, Z:  74.48  220.13  14.34
2.5  Seg length ending at pt. 3950 <= 0.1 at 0.0539.  (removed)
     A       X, Y, Z:  65.72  219.71  15.71
2.5  Seg length ending at pt. 3982 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  63.1  221.27  16.11
2.5  Seg length ending at pt. 3984 <= 0.1 at 0.0283.  (removed)
     A       X, Y, Z:  63.07  221.24  16.11
2.5  Seg length ending at pt. 4057 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  62.62  222.49  15.99
2.5  Seg length ending at pt. 4287 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  40.06  226.1  15.63
2.5  Seg length ending at pt. 4491 <= 0.1 at 0.0781.  (removed)
     A       X, Y, Z:  19.32  225.63  21.13
2.5  Seg length ending at pt. 4496 <= 0.1 at 0.0949.  (removed)
     A       X, Y, Z:  19.08  225.6  21.2
2.5  Seg length ending at pt. 4649 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  21.49  229.43  15.54
2.5  Seg length ending at pt. 4651 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  21.5  229.31  15.51
2.5  Seg length ending at pt. 4722 <= 0.1 at 0.0985.  (removed)
     A       X, Y, Z:  14.52  235.64  16.3
2.5  Seg length ending at pt. 4751 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  11.44  238.45  16.82
2.5  Seg length ending at pt. 4753 <= 0.1 at 0.02.  (removed)
     A       X, Y, Z:  11.4  238.46  16.82
2.5  Seg length ending at pt. 5074 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  134.93  172.49  13.0
2.5  Seg length ending at pt. 5150 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  123.66  174.15  13.86
2.5  Seg length ending at pt. 5413 <= 0.1 at 0.0866.  (removed)
     A       X, Y, Z:  138.55  156.24  16.42
2.5  Seg length ending at pt. 6009 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  129.07  102.41  20.0
2.5  Seg length ending at pt. 6037 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  128.53  102.71  19.97
2.5  Seg length ending at pt. 6040 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  128.36  102.85  19.94
2.5  Seg length ending at pt. 6059 <= 0.1 at 0.02.  (removed)
     A       X, Y, Z:  126.27  110.55  19.75
2.5  Seg length ending at pt. 6078 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  126.45  110.98  19.89
2.5  Seg length ending at pt. 6127 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  128.17  136.82  19.92
2.5  Seg length ending at pt. 6397 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  156.42  125.96  18.62
2.5  Seg length ending at pt. 6716 <= 0.1 at 0.0678.  (removed)
     A       X, Y, Z:  163.87  112.2  19.29
2.5  Seg length ending at pt. 6760 <= 0.1 at 0.0995.  (removed)
     A       X, Y, Z:  165.03  109.02  19.82
2.5  Seg length ending at pt. 6797 <= 0.1 at 0.0819.  (removed)
     A       X, Y, Z:  166.22  107.95  19.82
2.5  Seg length ending at pt. 6827 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  166.39  107.92  19.78
2.5  Seg length ending at pt. 6999 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  173.11  95.55  20.31
2.5  Seg length ending at pt. 7001 <= 0.1 at 0.0854.  (removed)
     A       X, Y, Z:  173.04  95.61  20.26
2.5  Seg length ending at pt. 7308 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  181.1  71.29  21.07
2.5  Seg length ending at pt. 7521 <= 0.1 at 0.0781.  (removed)
     A       X, Y, Z:  189.55  58.9  21.66
2.5  Seg length ending at pt. 7571 <= 0.1 at 0.0707.  (removed)
     A       X, Y, Z:  189.66  56.91  21.65
2.5  Seg length ending at pt. 7666 <= 0.1 at 0.0954.  (removed)
     A       X, Y, Z:  189.57  51.54  21.78
2.5  Seg length ending at pt. 7668 <= 0.1 at 0.0954.  (removed)
     A       X, Y, Z:  189.44  51.62  21.75
2.5  Seg length ending at pt. 7762 <= 0.1 at 0.0548.  (removed)
     A       X, Y, Z:  195.0  43.93  22.86
2.5  Seg length ending at pt. 7764 <= 0.1 at 0.0954.  (removed)
     A       X, Y, Z:  194.86  43.89  22.84
2.5  Seg length ending at pt. 7808 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  195.58  43.41  23.02
2.5  Seg length ending at pt. 7923 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  204.28  34.62  23.52
2.5  Seg length ending at pt. 8209 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  196.79  42.15  23.61
2.5  Seg length ending at pt. 8211 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  196.8  42.11  23.58
2.4  Seg length ending at pt. 8274 >= 6.0 stdevs above mean at 0.5758.  (no action taken)
     B1      X, Y, Z:  196.28  42.74  23.08
2.5  Seg length ending at pt. 876 <= 0.1 at 0.0539.  (removed)
     A       X, Y, Z:  135.85  224.35  16.84
2.5  Seg length ending at pt. 1304 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  169.66  249.66  22.97
2.5  Seg length ending at pt. 1308 <= 0.1 at 0.0883.  (removed)
     A       X, Y, Z:  169.69  249.75  23.04
2.5  Seg length ending at pt. 1691 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  102.93  238.2  20.79
2.5  Seg length ending at pt. 1808 <= 0.1 at 0.0671.  (removed)
     A       X, Y, Z:  111.2  242.99  21.4
2.5  Seg length ending at pt. 2754 <= 0.1 at 0.0995.  (removed)
     A       X, Y, Z:  57.95  192.93  13.87
2.5  Seg length ending at pt. 3054 <= 0.1 at 0.0671.  (removed)
     A       X, Y, Z:  91.43  224.23  14.26
2.5  Seg length ending at pt. 3139 <= 0.1 at 0.0245.  (removed)
     A       X, Y, Z:  86.91  230.68  17.75
2.5  Seg length ending at pt. 3250 <= 0.1 at 0.07.  (removed)
     A       X, Y, Z:  81.84  233.09  19.24
2.5  Seg length ending at pt. 3983 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  63.09  221.26  16.11
2.5  Seg length ending at pt. 4650 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  21.49  229.39  15.53
2.5  Seg length ending at pt. 4752 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  11.42  238.46  16.82
2.5  Seg length ending at pt. 8210 <= 0.1 at 0.0332.  (removed)
     A       X, Y, Z:  196.79  42.13  23.6
2.5  Seg length ending at pt. 1306 <= 0.1 at 0.0374.  (removed)
     A       X, Y, Z:  169.67  249.68  22.99
2.6  Line 1 and line 201 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  107.32  206.67  14.38
2.6  Line 1 and line 488 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  107.32  206.67  14.38
2.6  Line 201 and line 488 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  107.32  206.67  14.38
2.6  Line 1633 and line 1640 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  101.42  234.21  19.84
2.6  Line 1693 and line 1703 have the same coordinates.  (second line removed)
     A      X, Y, Z:  102.81  238.41  20.77
2.6  Line 3058 and line 3065 have the same coordinates.  (second line removed)
     A      X, Y, Z:  91.61  224.26  14.14
2.6  Line 3995 and line 4001 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  62.75  221.05  16.14
4.4  Line 201 of rad 10.0 links to 3 of rad 3.823.  (no action taken)
     B1      X, Y, Z:  107.32  206.67  14.38
4.4  Line 488 of rad 10.0 links to 2 of rad 3.823.  (no action taken)
     B1      X, Y, Z:  107.32  206.67  14.38
4.4  Line 5263 of rad 0.4 links to 5258 of rad 0.188.  (no action taken)
     B1      X, Y, Z:  131.36  164.68  15.5
4.4  Line 7882 of rad 0.263 links to 7881 of rad 0.125.  (no action taken)
     B1      X, Y, Z:  203.37  35.6  23.59
2.1  Line 171 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  130.32  185.02  13.33
2.1  Line 874 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  135.9  224.33  16.84
2.1  Line 1302 has 7 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  169.66  249.65  22.97
2.1  Line 1416 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  106.47  206.21  14.35
2.1  Line 1543 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  102.46  228.21  19.63
2.1  Line 1626 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  101.72  234.23  19.92
2.1  Line 1689 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  102.97  238.13  20.8
2.1  Line 1806 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  111.2  242.96  21.34
2.1  Line 1979 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  120.92  248.21  22.73
2.1  Line 2001 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  121.52  248.36  22.5
2.1  Line 2156 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  91.37  185.71  19.05
2.1  Line 2752 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  57.96  192.86  13.8
2.1  Line 3052 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  91.39  224.18  14.28
2.1  Line 3137 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  86.89  230.67  17.74
2.1  Line 3248 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  81.81  233.03  19.22
2.1  Line 3270 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  81.6  232.97  19.28
2.1  Line 3864 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  74.43  220.11  14.3
2.1  Line 3981 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  63.11  221.27  16.11
2.1  Line 4056 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  62.56  222.48  15.92
2.1  Line 4286 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  39.97  226.14  15.62
2.1  Line 4495 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  19.03  225.56  21.13
2.1  Line 4648 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  21.49  229.46  15.55
2.1  Line 4750 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  11.45  238.45  16.82
2.1  Line 5073 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  134.88  172.43  12.95
2.1  Line 5149 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  123.73  174.18  13.87
2.1  Line 6008 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  129.01  102.43  20.0
2.1  Line 6396 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  156.42  125.98  18.69
2.1  Line 6715 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  163.93  112.17  19.28
2.1  Line 6759 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  165.06  109.11  19.79
2.1  Line 6796 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  166.19  108.02  19.79
2.1  Line 6826 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  166.33  107.85  19.8
2.1  Line 6998 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  173.11  95.48  20.33
2.1  Line 7520 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  189.49  58.85  21.66
2.1  Line 7570 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  189.59  56.91  21.64
2.1  Line 7761 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  195.05  43.95  22.87
2.1  Line 7763 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  194.95  43.92  22.85
2.1  Line 7807 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  195.57  43.5  23.04
2.1  Line 7922 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  204.34  34.6  23.52
2.1  Line 8208 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  196.78  42.16  23.61
 
 


Number of type A irregularities = 85
Number of type B1 irregularities = 61
Number of type B2 irregularities = 0
Number of type C irregularities = 0
