# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\M5Neuron2Imaris.ims.swc.swc created with StdSwc version 1.31 on 12/11/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\M5Neuron2Imaris.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  90.94  74.78  13.44
4.3  Radius of line 2 at 4.992 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  91.04  74.79  13.46
4.3  Radius of line 3 at 4.992 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  91.14  74.8  13.47
4.3  Radius of line 4 at 4.992 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  91.33  74.82  13.5
4.3  Radius of line 5 at 2.13 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  91.63  74.82  13.52
4.3  Radius of line 165 at 9.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  90.94  74.78  13.44
4.3  Radius of line 166 at 4.992 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  90.45  74.28  13.48
4.3  Radius of line 167 at 2.13 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  90.31  73.89  13.49
4.3  Radius of line 703 at 9.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  90.94  74.78  13.44
4.3  Radius of line 704 at 4.992 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  91.19  74.27  13.5
4.3  Radius of line 705 at 2.13 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  91.43  73.98  13.51
4.3  Radius of line 1207 at 9.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  90.94  74.78  13.44
4.3  Radius of line 1208 at 4.557 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  90.55  74.86  13.48
4.5  Radius of terminal line 2115 at 0.457 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.37  139.41  12.51
4.5  Radius of terminal line 2231 at 0.364 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.48  149.23  12.49
4.5  Radius of terminal line 2250 at 0.401 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.75  150.98  12.5
4.5  Radius of terminal line 2416 at 0.323 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.14  163.93  12.33
4.5  Radius of terminal line 3910 at 0.493 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  22.78  198.88  5.49
4.5  Radius of terminal line 3930 at 0.309 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  50.37  207.35  7.38
4.5  Radius of terminal line 4041 at 0.31 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  90.9  124.35  12.52
2.4  Seg length ending at pt. 166 >= 6.0 stdevs above mean at 0.7012.  (no action taken)
     B1      X, Y, Z:  90.45  74.28  13.48
2.5  Seg length ending at pt. 485 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  89.76  55.68  11.99
2.5  Seg length ending at pt. 487 <= 0.1 at 0.0825.  (removed)
     A       X, Y, Z:  89.64  55.67  12.02
2.5  Seg length ending at pt. 588 <= 0.1 at 0.0825.  (removed)
     A       X, Y, Z:  88.44  48.01  10.92
2.5  Seg length ending at pt. 612 <= 0.1 at 0.0894.  (removed)
     A       X, Y, Z:  88.52  47.62  10.64
2.4  Seg length ending at pt. 704 >= 6.0 stdevs above mean at 0.5711.  (no action taken)
     B1      X, Y, Z:  91.19  74.27  13.5
2.5  Seg length ending at pt. 1207 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  90.94  74.78  13.44
2.5  Seg length ending at pt. 1497 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  65.63  67.08  15.34
2.5  Seg length ending at pt. 1951 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  89.07  119.33  10.35
2.5  Seg length ending at pt. 1953 <= 0.1 at 0.0539.  (removed)
     A       X, Y, Z:  89.03  119.4  10.33
2.5  Seg length ending at pt. 2651 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  93.39  193.77  10.98
2.5  Seg length ending at pt. 2720 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  91.43  201.14  10.67
2.5  Seg length ending at pt. 2722 <= 0.1 at 0.0781.  (removed)
     A       X, Y, Z:  91.41  201.04  10.77
2.5  Seg length ending at pt. 2816 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  91.58  212.97  10.97
2.5  Seg length ending at pt. 3002 <= 0.1 at 0.086.  (removed)
     A       X, Y, Z:  88.84  215.16  8.76
2.5  Seg length ending at pt. 3372 <= 0.1 at 0.0458.  (removed)
     A       X, Y, Z:  86.52  204.18  9.51
2.5  Seg length ending at pt. 3374 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  86.5  204.13  9.61
2.5  Seg length ending at pt. 3548 <= 0.1 at 0.086.  (removed)
     A       X, Y, Z:  70.81  204.69  7.98
2.5  Seg length ending at pt. 3958 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  94.65  151.68  12.34
2.5  Seg length ending at pt. 486 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  89.72  55.67  12.0
2.5  Seg length ending at pt. 1952 <= 0.1 at 0.0592.  (removed)
     A       X, Y, Z:  89.06  119.36  10.35
2.5  Seg length ending at pt. 3373 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  86.51  204.16  9.54
2.7  Line 2942 of rad 0.253 is an included side branch.  (removed)
     A      X, Y, Z:  99.0  229.7  13.21
2.6  Line 1 and line 165 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  90.94  74.78  13.44
2.6  Line 1 and line 703 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  90.94  74.78  13.44
2.6  Line 165 and line 703 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  90.94  74.78  13.44
2.6  Line 340 and line 347 have the same coordinates.  (second line removed)
     A      X, Y, Z:  84.11  55.56  6.8
2.6  Line 1966 and line 1979 have the same coordinates.  (second line removed)
     A      X, Y, Z:  88.87  119.65  10.26
2.6  Line 1973 and line 1979 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  88.71  119.89  10.1
4.4  Line 2735 of rad 0.4 links to 2731 of rad 0.188.  (no action taken)
     B1      X, Y, Z:  90.63  202.95  10.32
2.1  Line 484 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  89.79  55.68  11.98
2.1  Line 587 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  88.46  48.01  10.84
2.1  Line 611 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  88.48  47.62  10.56
2.1  Line 1496 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  65.71  67.09  15.33
2.1  Line 1950 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  89.09  119.31  10.36
2.1  Line 3371 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  86.53  204.2  9.47
2.1  Line 3547 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  70.84  204.77  7.97
2.1  Line 3957 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  94.63  151.67  12.36
 
 


Number of type A irregularities = 23
Number of type B1 irregularities = 35
Number of type B2 irregularities = 0
Number of type C irregularities = 0
