# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\M4Neuron2Imaris.ims.swc.swc created with StdSwc version 1.31 on 12/11/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\M4Neuron2Imaris.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  112.12  76.36  12.74
4.3  Radius of line 2 at 2.55 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  111.86  76.39  12.72
4.3  Radius of line 3 at 2.55 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  111.6  76.43  12.69
4.3  Radius of line 4 at 1.219 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  111.58  76.33  12.64
4.3  Radius of line 5 at 1.219 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  111.55  76.22  12.6
4.3  Radius of line 6 at 1.219 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  111.5  76.02  12.51
4.3  Radius of line 77 at 1.219 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  111.87  76.98  12.62
4.3  Radius of line 194 at 1.219 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  111.44  76.5  12.67
4.5  Radius of terminal line 612 at 0.3 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  58.32  74.32  22.57
4.3  Radius of line 1332 at 1.219 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  111.22  76.43  12.68
4.3  Radius of line 3360 at 9.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  112.12  76.36  12.74
4.3  Radius of line 3361 at 4.142 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  112.06  76.95  12.83
4.3  Radius of line 3362 at 1.227 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  112.16  77.31  12.94
4.3  Radius of line 4301 at 9.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  112.12  76.36  12.74
4.3  Radius of line 4302 at 4.142 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  111.78  76.54  12.71
4.3  Radius of line 4303 at 1.227 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  111.47  76.78  12.7
4.5  Radius of terminal line 5754 at 0.442 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  103.9  171.59  16.25
2.4  Seg length ending at pt. 77 >= 6.0 stdevs above mean at 0.8249.  (no action taken)
     B1      X, Y, Z:  111.87  76.98  12.62
2.5  Seg length ending at pt. 661 <= 0.1 at 0.0412.  (removed)
     A       X, Y, Z:  77.12  84.82  14.74
2.5  Seg length ending at pt. 907 <= 0.1 at 0.0592.  (removed)
     A       X, Y, Z:  55.99  96.36  19.19
2.5  Seg length ending at pt. 916 <= 0.1 at 0.0911.  (removed)
     A       X, Y, Z:  55.88  96.43  19.1
2.5  Seg length ending at pt. 1033 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  70.89  79.6  15.33
2.5  Seg length ending at pt. 1117 <= 0.1 at 0.0837.  (removed)
     A       X, Y, Z:  58.79  77.07  16.5
2.5  Seg length ending at pt. 2249 <= 0.1 at 0.0436.  (removed)
     A       X, Y, Z:  58.08  60.4  16.52
2.5  Seg length ending at pt. 2251 <= 0.1 at 0.0911.  (removed)
     A       X, Y, Z:  58.15  60.3  16.47
2.5  Seg length ending at pt. 2355 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  49.73  59.62  18.18
2.5  Seg length ending at pt. 2442 <= 0.1 at 0.0954.  (removed)
     A       X, Y, Z:  41.28  58.5  19.32
2.5  Seg length ending at pt. 2907 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  29.39  62.24  17.29
2.5  Seg length ending at pt. 3071 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  65.37  51.31  16.17
2.5  Seg length ending at pt. 3073 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  65.37  51.31  16.19
2.5  Seg length ending at pt. 3075 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  65.38  51.31  16.24
2.4  Seg length ending at pt. 3361 >= 6.0 stdevs above mean at 0.5998.  (no action taken)
     B1      X, Y, Z:  112.06  76.95  12.83
2.5  Seg length ending at pt. 3575 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  134.51  93.99  22.97
2.5  Seg length ending at pt. 3577 <= 0.1 at 0.0755.  (removed)
     A       X, Y, Z:  134.57  94.05  23.04
2.5  Seg length ending at pt. 3627 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  136.25  95.09  22.6
2.5  Seg length ending at pt. 3688 <= 0.1 at 0.0424.  (removed)
     A       X, Y, Z:  141.43  101.07  22.26
2.5  Seg length ending at pt. 3690 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  141.4  101.03  22.28
2.5  Seg length ending at pt. 3760 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  148.77  109.06  21.49
2.5  Seg length ending at pt. 3906 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  162.93  123.25  15.31
2.5  Seg length ending at pt. 3908 <= 0.1 at 0.0283.  (removed)
     A       X, Y, Z:  162.91  123.25  15.29
2.5  Seg length ending at pt. 3910 <= 0.1 at 0.0866.  (removed)
     A       X, Y, Z:  162.84  123.27  15.19
2.5  Seg length ending at pt. 4253 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  180.93  156.51  12.92
2.5  Seg length ending at pt. 4255 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  181.03  156.48  12.91
2.5  Seg length ending at pt. 4301 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  112.12  76.36  12.74
2.5  Seg length ending at pt. 5058 <= 0.1 at 0.0361.  (removed)
     A       X, Y, Z:  121.79  150.28  18.72
2.5  Seg length ending at pt. 5060 <= 0.1 at 0.0721.  (removed)
     A       X, Y, Z:  121.78  150.37  18.78
2.5  Seg length ending at pt. 5064 <= 0.1 at 0.0678.  (removed)
     A       X, Y, Z:  121.68  150.1  18.68
2.5  Seg length ending at pt. 5074 <= 0.1 at 0.049.  (removed)
     A       X, Y, Z:  121.78  150.09  18.63
2.5  Seg length ending at pt. 5076 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  121.71  149.96  18.67
2.4  Seg length ending at pt. 5090 >= 6.0 stdevs above mean at 1.9587.  (no action taken)
     B1      X, Y, Z:  121.56  150.07  18.75
2.5  Seg length ending at pt. 5376 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  128.85  165.62  17.74
2.5  Seg length ending at pt. 5378 <= 0.1 at 0.0424.  (removed)
     A       X, Y, Z:  128.86  165.63  17.68
2.5  Seg length ending at pt. 5536 <= 0.1 at 0.0374.  (removed)
     A       X, Y, Z:  120.03  171.52  17.96
2.5  Seg length ending at pt. 5538 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  120.0  171.59  18.03
2.5  Seg length ending at pt. 5604 <= 0.1 at 0.0964.  (removed)
     A       X, Y, Z:  115.02  172.2  17.63
2.5  Seg length ending at pt. 5649 <= 0.1 at 0.097.  (removed)
     A       X, Y, Z:  109.45  171.32  17.43
2.5  Seg length ending at pt. 5651 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  109.54  171.35  17.4
2.5  Seg length ending at pt. 5678 <= 0.1 at 0.07.  (removed)
     A       X, Y, Z:  105.74  172.54  17.12
2.5  Seg length ending at pt. 5708 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  103.88  172.02  16.38
2.5  Seg length ending at pt. 5710 <= 0.1 at 0.02.  (removed)
     A       X, Y, Z:  103.87  171.99  16.37
2.5  Seg length ending at pt. 5712 <= 0.1 at 0.0678.  (removed)
     A       X, Y, Z:  103.86  171.9  16.32
2.5  Seg length ending at pt. 6180 <= 0.1 at 0.0283.  (removed)
     A       X, Y, Z:  172.42  162.0  13.72
2.5  Seg length ending at pt. 6182 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  172.47  162.05  13.72
2.5  Seg length ending at pt. 6438 <= 0.1 at 0.052.  (removed)
     A       X, Y, Z:  135.37  173.42  13.91
2.5  Seg length ending at pt. 6478 <= 0.1 at 0.0245.  (removed)
     A       X, Y, Z:  135.37  177.33  14.01
2.5  Seg length ending at pt. 6480 <= 0.1 at 0.0539.  (removed)
     A       X, Y, Z:  135.4  177.28  13.96
2.5  Seg length ending at pt. 6561 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  137.63  182.54  14.64
2.5  Seg length ending at pt. 6888 <= 0.1 at 0.0954.  (removed)
     A       X, Y, Z:  140.48  192.0  14.38
2.4  Seg length ending at pt. 6897 >= 6.0 stdevs above mean at 1.9168.  (no action taken)
     B1      X, Y, Z:  140.64  192.08  14.36
2.5  Seg length ending at pt. 6913 <= 0.1 at 0.0825.  (removed)
     A       X, Y, Z:  135.23  173.36  13.87
2.5  Seg length ending at pt. 7149 <= 0.1 at 0.0877.  (removed)
     A       X, Y, Z:  162.21  185.85  13.75
2.5  Seg length ending at pt. 7227 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  161.94  191.27  16.09
2.5  Seg length ending at pt. 2250 <= 0.1 at 0.0837.  (removed)
     A       X, Y, Z:  58.1  60.37  16.5
2.5  Seg length ending at pt. 3072 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  65.37  51.31  16.18
2.5  Seg length ending at pt. 3576 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  134.53  94.01  22.99
2.5  Seg length ending at pt. 3689 <= 0.1 at 0.0539.  (removed)
     A       X, Y, Z:  141.44  101.06  22.27
2.5  Seg length ending at pt. 3907 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  162.93  123.25  15.31
2.5  Seg length ending at pt. 4254 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  180.96  156.5  12.91
2.5  Seg length ending at pt. 5059 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  121.78  150.31  18.74
2.5  Seg length ending at pt. 5075 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  121.76  150.04  18.64
2.5  Seg length ending at pt. 5377 <= 0.1 at 0.0412.  (removed)
     A       X, Y, Z:  128.85  165.62  17.72
2.5  Seg length ending at pt. 5537 <= 0.1 at 0.0671.  (removed)
     A       X, Y, Z:  120.02  171.54  17.98
2.5  Seg length ending at pt. 5709 <= 0.1 at 0.0245.  (removed)
     A       X, Y, Z:  103.87  172.01  16.37
2.5  Seg length ending at pt. 6181 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  172.44  162.01  13.72
2.5  Seg length ending at pt. 6479 <= 0.1 at 0.0469.  (removed)
     A       X, Y, Z:  135.38  177.32  13.99
2.5  Seg length ending at pt. 3074 <= 0.1 at 0.0412.  (removed)
     A       X, Y, Z:  65.38  51.31  16.21
2.5  Seg length ending at pt. 3909 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  162.89  123.26  15.26
2.5  Seg length ending at pt. 5711 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  103.87  171.96  16.35
2.7  Line 612 of rad 0.3 is an included side branch.  (removed)
     A      X, Y, Z:  58.32  74.32  22.57
2.6  Line 1 and line 3360 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  112.12  76.36  12.74
2.6  Line 3110 and line 3127 have the same coordinates.  (second line removed)
     A      X, Y, Z:  65.42  51.31  16.58
2.6  Line 5079 and line 5084 have the same coordinates.  (second line removed)
     A      X, Y, Z:  121.56  150.07  18.75
2.6  Line 5079 and line 5091 have the same coordinates.  (second line removed)
     A      X, Y, Z:  121.56  150.07  18.75
2.6  Line 6186 and line 6199 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  172.65  162.23  13.77
4.4  Line 3360 of rad 9.0 links to 2 of rad 2.55.  (no action taken)
     B1      X, Y, Z:  112.12  76.36  12.74
4.4  Line 5288 of rad 0.4 links to 5278 of rad 0.188.  (no action taken)
     B1      X, Y, Z:  133.33  156.03  13.58
4.4  Line 6437 of rad 0.4 links to 6434 of rad 0.188.  (no action taken)
     B1      X, Y, Z:  135.38  173.37  13.92
4.4  Line 6897 of rad 0.375 links to 6887 of rad 0.125.  (no action taken)
     B1      X, Y, Z:  140.64  192.08  14.36
2.1  Line 906 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  56.04  96.33  19.18
2.1  Line 1032 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  70.84  79.57  15.38
2.1  Line 1116 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  58.82  77.13  16.55
2.1  Line 2248 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  58.05  60.43  16.53
2.1  Line 2354 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  49.67  59.6  18.23
2.1  Line 2441 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  41.25  58.49  19.23
2.1  Line 2906 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  29.45  62.22  17.28
2.1  Line 3070 has 7 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  65.37  51.31  16.17
2.1  Line 3574 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  134.5  93.97  22.95
2.1  Line 3626 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  136.24  95.13  22.64
2.1  Line 3759 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  148.77  109.03  21.53
2.1  Line 3905 has 7 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  162.94  123.25  15.32
2.1  Line 4252 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  180.9  156.52  12.92
2.1  Line 5057 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  121.79  150.25  18.7
2.1  Line 5063 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  121.74  150.11  18.65
2.1  Line 5073 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  119.67  149.57  18.87
2.1  Line 5375 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  128.84  165.62  17.76
2.1  Line 5535 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  120.04  171.49  17.94
2.1  Line 5603 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  114.97  172.28  17.61
2.1  Line 5677 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  105.74  172.47  17.12
2.1  Line 5707 has 6 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  103.88  172.03  16.38
2.1  Line 6179 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  172.4  161.98  13.72
2.1  Line 6437 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  135.38  173.37  13.92
2.1  Line 6477 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  135.36  177.35  14.02
2.1  Line 6560 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  137.57  182.56  14.69
2.1  Line 6912 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  135.31  173.36  13.89
2.1  Line 7148 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  162.29  185.87  13.78
2.1  Line 7226 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  161.91  191.22  16.07
 
 


Number of type A irregularities = 71
Number of type B1 irregularities = 55
Number of type B2 irregularities = 0
Number of type C irregularities = 0
