# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\M3Neuron6Imaris.ims.swc.swc created with StdSwc version 1.31 on 12/11/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\M3Neuron6Imaris.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  100.36  98.18  11.57
4.3  Radius of line 2 at 3.462 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  100.3  98.23  11.49
4.3  Radius of line 3 at 3.462 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  100.23  98.27  11.41
4.3  Radius of line 4 at 3.462 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  100.1  98.35  11.24
4.3  Radius of line 56 at 7.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  100.36  98.18  11.57
4.3  Radius of line 57 at 3.462 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  99.99  98.01  11.33
4.3  Radius of line 735 at 7.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  100.36  98.18  11.57
4.3  Radius of line 736 at 3.462 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  100.83  97.91  11.44
4.5  Radius of terminal line 1782 at 0.24 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  146.75  49.25  18.59
4.3  Radius of line 1860 at 7.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  100.36  98.18  11.57
4.3  Radius of line 1861 at 3.471 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  100.57  98.42  11.49
4.5  Radius of terminal line 2089 at 0.267 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  127.95  89.94  21.17
4.5  Radius of terminal line 5253 at 0.408 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.34  243.05  21.17
2.5  Seg length ending at pt. 427 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  93.57  93.59  13.66
2.4  Seg length ending at pt. 736 >= 6.0 stdevs above mean at 0.5574.  (no action taken)
     B1      X, Y, Z:  100.83  97.91  11.44
2.5  Seg length ending at pt. 758 <= 0.1 at 0.0781.  (removed)
     A       X, Y, Z:  102.29  93.41  13.29
2.5  Seg length ending at pt. 842 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  107.82  92.08  15.9
2.5  Seg length ending at pt. 905 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  110.02  89.51  18.01
2.5  Seg length ending at pt. 907 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  110.01  89.46  18.08
2.5  Seg length ending at pt. 909 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  109.99  89.57  18.16
2.5  Seg length ending at pt. 1013 <= 0.1 at 0.0458.  (removed)
     A       X, Y, Z:  115.68  80.95  19.87
2.5  Seg length ending at pt. 1015 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  115.7  81.04  19.77
2.4  Seg length ending at pt. 1073 >= 6.0 stdevs above mean at 0.5281.  (no action taken)
     B1      X, Y, Z:  116.82  76.37  20.83
2.5  Seg length ending at pt. 1234 <= 0.1 at 0.0949.  (removed)
     A       X, Y, Z:  117.3  82.37  15.31
2.5  Seg length ending at pt. 1584 <= 0.1 at 0.0548.  (removed)
     A       X, Y, Z:  132.69  55.15  15.56
2.5  Seg length ending at pt. 1586 <= 0.1 at 0.0854.  (removed)
     A       X, Y, Z:  132.69  55.03  15.51
2.5  Seg length ending at pt. 1629 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  134.33  55.02  15.9
2.5  Seg length ending at pt. 1662 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  137.72  52.82  16.89
2.5  Seg length ending at pt. 1664 <= 0.1 at 0.0361.  (removed)
     A       X, Y, Z:  137.69  52.77  16.89
2.5  Seg length ending at pt. 1860 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  100.36  98.18  11.57
2.5  Seg length ending at pt. 2091 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  127.71  89.98  21.22
2.5  Seg length ending at pt. 2093 <= 0.1 at 0.04.  (removed)
     A       X, Y, Z:  127.77  89.98  21.22
2.5  Seg length ending at pt. 2154 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  124.4  90.31  17.32
2.4  Seg length ending at pt. 2163 >= 6.0 stdevs above mean at 0.5281.  (no action taken)
     B1      X, Y, Z:  124.84  90.12  17.71
2.5  Seg length ending at pt. 2176 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  126.29  91.05  18.61
2.5  Seg length ending at pt. 2294 <= 0.1 at 0.0964.  (removed)
     A       X, Y, Z:  133.24  94.06  21.01
2.5  Seg length ending at pt. 2730 <= 0.1 at 0.0583.  (removed)
     A       X, Y, Z:  164.58  54.72  14.45
2.5  Seg length ending at pt. 2788 <= 0.1 at 0.0458.  (removed)
     A       X, Y, Z:  168.21  52.04  14.43
2.5  Seg length ending at pt. 2815 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  171.04  50.48  13.33
2.5  Seg length ending at pt. 3184 <= 0.1 at 0.0436.  (removed)
     A       X, Y, Z:  116.61  141.2  16.44
2.5  Seg length ending at pt. 3186 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  116.52  141.12  16.47
2.5  Seg length ending at pt. 3234 <= 0.1 at 0.04.  (removed)
     A       X, Y, Z:  120.28  141.37  17.34
2.5  Seg length ending at pt. 3236 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  120.27  141.49  17.36
2.5  Seg length ending at pt. 3350 <= 0.1 at 0.0781.  (removed)
     A       X, Y, Z:  125.08  138.26  18.73
2.4  Seg length ending at pt. 3482 >= 6.0 stdevs above mean at 0.6339.  (no action taken)
     B1      X, Y, Z:  136.63  125.7  20.74
2.5  Seg length ending at pt. 3525 <= 0.1 at 0.0583.  (removed)
     A       X, Y, Z:  127.42  136.49  19.92
2.5  Seg length ending at pt. 3763 <= 0.1 at 0.0566.  (removed)
     A       X, Y, Z:  109.42  157.42  20.02
2.5  Seg length ending at pt. 3843 <= 0.1 at 0.0663.  (removed)
     A       X, Y, Z:  107.0  163.76  21.23
2.4  Seg length ending at pt. 3853 >= 6.0 stdevs above mean at 0.7072.  (no action taken)
     B1      X, Y, Z:  107.1  164.43  21.1
2.5  Seg length ending at pt. 4064 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  111.46  175.5  12.41
2.5  Seg length ending at pt. 5034 <= 0.1 at 0.0648.  (removed)
     A       X, Y, Z:  129.28  247.6  17.98
2.5  Seg length ending at pt. 5038 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  129.08  247.63  18.26
2.5  Seg length ending at pt. 5040 <= 0.1 at 0.0849.  (removed)
     A       X, Y, Z:  129.02  247.62  18.41
2.5  Seg length ending at pt. 5196 <= 0.1 at 0.0592.  (removed)
     A       X, Y, Z:  111.94  243.82  20.35
2.5  Seg length ending at pt. 906 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  110.02  89.47  18.02
2.5  Seg length ending at pt. 1014 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  115.68  80.97  19.83
2.5  Seg length ending at pt. 1585 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  132.69  55.11  15.54
2.5  Seg length ending at pt. 1663 <= 0.1 at 0.0447.  (removed)
     A       X, Y, Z:  137.71  52.8  16.89
2.5  Seg length ending at pt. 2092 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  127.73  89.98  21.22
2.5  Seg length ending at pt. 3185 <= 0.1 at 0.0872.  (removed)
     A       X, Y, Z:  116.58  141.17  16.45
2.5  Seg length ending at pt. 3235 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  120.28  141.41  17.35
2.7  Line 2089 of rad 0.267 is an included side branch.  (removed)
     A      X, Y, Z:  127.95  89.94  21.17
2.7  Line 5253 of rad 0.408 is an included side branch.  (removed)
     A      X, Y, Z:  106.34  243.05  21.17
2.6  Line 1 and line 56 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  100.36  98.18  11.57
2.6  Line 1 and line 735 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  100.36  98.18  11.57
2.6  Line 56 and line 735 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  100.36  98.18  11.57
4.4  Line 56 of rad 7.5 links to 3 of rad 3.462.  (no action taken)
     B1      X, Y, Z:  100.36  98.18  11.57
4.4  Line 579 of rad 0.4 links to 574 of rad 0.188.  (no action taken)
     B1      X, Y, Z:  73.63  102.08  12.46
4.4  Line 735 of rad 7.5 links to 2 of rad 3.462.  (no action taken)
     B1      X, Y, Z:  100.36  98.18  11.57
4.4  Line 2040 of rad 0.4 links to 2039 of rad 0.188.  (no action taken)
     B1      X, Y, Z:  124.46  90.28  17.38
2.1  Line 426 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  93.55  93.68  13.67
2.1  Line 757 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  102.35  93.45  13.26
2.1  Line 904 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  110.02  89.54  18.0
2.1  Line 1233 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  117.3  82.34  15.22
2.1  Line 1583 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  132.7  55.2  15.58
2.1  Line 1628 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  134.29  54.94  15.93
2.1  Line 1661 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  137.73  52.84  16.89
2.1  Line 2090 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  127.7  89.98  21.22
2.1  Line 2175 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  126.27  91.04  18.69
2.1  Line 2293 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  133.19  93.98  21.03
2.1  Line 2729 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  164.58  54.69  14.4
2.1  Line 2814 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  171.0  50.46  13.26
2.1  Line 3183 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  116.64  141.23  16.43
2.1  Line 3233 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  120.28  141.33  17.34
2.1  Line 3762 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  109.46  157.42  20.06
2.1  Line 3842 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  107.06  163.74  21.25
2.1  Line 4063 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  111.51  175.53  12.43
2.1  Line 5033 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  129.33  247.59  17.94
2.1  Line 5195 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  111.99  243.85  20.34
 
 


Number of type A irregularities = 45
Number of type B1 irregularities = 44
Number of type B2 irregularities = 0
Number of type C irregularities = 0
