# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\M3Neuron5Imaris.ims.swc.swc created with StdSwc version 1.31 on 12/11/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\M3Neuron5Imaris.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  85.34  84.1  4.85
4.3  Radius of line 2 at 2.55 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  85.14  84.32  4.67
4.3  Radius of line 3 at 1.324 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  85.07  84.45  4.61
4.3  Radius of line 4 at 1.324 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  85.01  84.58  4.55
4.3  Radius of line 5 at 0.506 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  84.95  84.86  4.49
4.5  Radius of terminal line 728 at 0.523 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  114.08  227.21  7.42
4.5  Radius of terminal line 745 at 0.448 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  113.88  226.38  7.38
4.5  Radius of terminal line 772 at 0.49 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  114.22  224.77  7.3
4.3  Radius of line 2464 at 0.938 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  84.83  83.93  4.55
4.3  Radius of line 2465 at 0.534 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  84.89  83.81  4.54
4.3  Radius of line 2466 at 0.534 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  84.95  83.69  4.52
4.3  Radius of line 3922 at 0.505 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  84.58  83.7  4.48
4.3  Radius of line 4786 at 0.505 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  84.89  83.8  4.51
4.3  Radius of line 4925 at 1.324 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  84.82  84.1  4.57
4.3  Radius of line 4926 at 0.506 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  84.54  84.01  4.49
2.5  Seg length ending at pt. 681 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  114.29  227.48  7.55
2.5  Seg length ending at pt. 1176 <= 0.1 at 0.0949.  (removed)
     A       X, Y, Z:  121.81  181.05  7.74
2.5  Seg length ending at pt. 1426 <= 0.1 at 0.0707.  (removed)
     A       X, Y, Z:  74.93  179.98  8.49
2.5  Seg length ending at pt. 1631 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  92.81  151.27  9.02
2.5  Seg length ending at pt. 1633 <= 0.1 at 0.0583.  (removed)
     A       X, Y, Z:  92.86  151.31  9.07
2.5  Seg length ending at pt. 1639 <= 0.1 at 0.0663.  (removed)
     A       X, Y, Z:  93.54  151.71  9.48
2.5  Seg length ending at pt. 1690 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  101.65  157.68  7.97
2.4  Seg length ending at pt. 2464 >= 6.0 stdevs above mean at 0.5758.  (no action taken)
     B1      X, Y, Z:  84.83  83.93  4.55
2.5  Seg length ending at pt. 2657 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  89.49  54.44  4.06
2.5  Seg length ending at pt. 2701 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  91.91  79.95  5.75
2.5  Seg length ending at pt. 2795 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  110.75  82.38  8.9
2.5  Seg length ending at pt. 2797 <= 0.1 at 0.052.  (removed)
     A       X, Y, Z:  110.8  82.33  8.86
2.5  Seg length ending at pt. 3080 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  112.25  85.91  9.43
2.5  Seg length ending at pt. 3156 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  116.7  102.21  9.33
2.5  Seg length ending at pt. 3158 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  116.72  102.22  9.32
2.5  Seg length ending at pt. 3160 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  116.79  102.26  9.28
2.5  Seg length ending at pt. 3182 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  119.26  102.64  7.08
2.5  Seg length ending at pt. 3184 <= 0.1 at 0.0906.  (removed)
     A       X, Y, Z:  119.31  102.76  7.04
2.4  Seg length ending at pt. 3711 >= 6.0 stdevs above mean at 0.7528.  (no action taken)
     B1      X, Y, Z:  85.66  83.94  4.53
2.5  Seg length ending at pt. 3966 <= 0.1 at 0.0361.  (removed)
     A       X, Y, Z:  77.94  78.38  6.96
2.5  Seg length ending at pt. 3968 <= 0.1 at 0.0566.  (removed)
     A       X, Y, Z:  77.88  78.32  6.96
2.5  Seg length ending at pt. 3976 <= 0.1 at 0.0995.  (removed)
     A       X, Y, Z:  76.92  77.25  6.84
2.5  Seg length ending at pt. 4216 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  74.86  31.53  6.96
2.5  Seg length ending at pt. 4218 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  74.87  31.44  6.94
2.5  Seg length ending at pt. 4425 <= 0.1 at 0.0995.  (removed)
     A       X, Y, Z:  70.72  47.13  6.44
2.5  Seg length ending at pt. 4572 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  76.27  76.76  6.77
2.5  Seg length ending at pt. 4585 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  76.94  77.37  6.82
2.5  Seg length ending at pt. 4778 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  72.93  76.27  5.33
2.5  Seg length ending at pt. 5226 <= 0.1 at 0.0985.  (removed)
     A       X, Y, Z:  35.57  77.18  8.56
2.5  Seg length ending at pt. 5345 <= 0.1 at 0.0917.  (removed)
     A       X, Y, Z:  68.28  87.58  6.66
2.5  Seg length ending at pt. 5481 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  70.8  78.83  6.9
2.5  Seg length ending at pt. 5483 <= 0.1 at 0.0283.  (removed)
     A       X, Y, Z:  70.77  78.8  6.89
2.5  Seg length ending at pt. 5491 <= 0.1 at 0.0592.  (removed)
     A       X, Y, Z:  69.91  77.74  6.84
2.5  Seg length ending at pt. 1632 <= 0.1 at 0.052.  (removed)
     A       X, Y, Z:  92.83  151.28  9.03
2.5  Seg length ending at pt. 2796 <= 0.1 at 0.06.  (removed)
     A       X, Y, Z:  110.77  82.36  8.89
2.5  Seg length ending at pt. 3157 <= 0.1 at 0.0173.  (removed)
     A       X, Y, Z:  116.7  102.22  9.33
2.5  Seg length ending at pt. 3967 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  77.92  78.36  6.96
2.5  Seg length ending at pt. 4217 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  74.86  31.5  6.95
2.5  Seg length ending at pt. 5482 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  70.79  78.82  6.89
2.5  Seg length ending at pt. 3159 <= 0.1 at 0.0656.  (removed)
     A       X, Y, Z:  116.74  102.24  9.31
2.7  Line 3486 of rad 0.125 is an included side branch.  (removed)
     A      X, Y, Z:  112.31  77.84  6.72
2.6  Line 1834 and line 1851 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  94.23  151.78  9.18
2.6  Line 1835 and line 1852 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  94.35  151.81  9.18
2.6  Line 1836 and line 1853 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  94.46  151.84  9.17
2.6  Line 1868 and line 1888 have the same coordinates.  (second line removed)
     A      X, Y, Z:  92.7  151.32  9.15
2.6  Line 1869 and line 1888 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  92.57  151.33  9.23
2.6  Line 1870 and line 1889 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  92.44  151.32  9.28
2.6  Line 1871 and line 1890 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  92.32  151.3  9.33
2.6  Line 1872 and line 1891 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  92.21  151.29  9.38
2.6  Line 1873 and line 1892 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  92.1  151.28  9.43
2.6  Line 1874 and line 1893 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  91.98  151.28  9.46
2.6  Line 1875 and line 1894 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  91.85  151.28  9.47
2.6  Line 1877 and line 1896 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  91.6  151.28  9.47
2.6  Line 1878 and line 1897 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  91.48  151.28  9.47
2.6  Line 1879 and line 1898 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  91.36  151.29  9.47
2.6  Line 3006 and line 3029 have the same coordinates.  (second line removed)
     A      X, Y, Z:  110.52  82.44  8.99
2.6  Line 3196 and line 3221 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  119.3  102.53  7.0
2.6  Line 3196 and line 3231 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  119.3  102.53  7.0
2.6  Line 3199 and line 3224 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  119.36  102.18  6.9
2.6  Line 3200 and line 3225 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  119.36  102.06  6.9
2.6  Line 3221 and line 3232 have the same coordinates.  (second line removed)
     A      X, Y, Z:  119.3  102.53  7.0
2.6  Line 3222 and line 3232 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  119.34  102.43  6.94
2.6  Line 3223 and line 3233 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  119.36  102.31  6.91
2.6  Line 4320 and line 4349 have the same coordinates.  (second line removed)
     A      X, Y, Z:  74.96  31.49  6.85
2.6  Line 4380 and line 4400 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  72.25  40.73  6.96
2.6  Line 4635 and line 4661 have the same coordinates.  (second line removed)
     A      X, Y, Z:  77.96  78.42  7.1
2.6  Line 4635 and line 4672 have the same coordinates.  (second line removed)
     A      X, Y, Z:  77.96  78.42  7.1
2.6  Line 5682 and line 5703 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  70.59  78.88  7.69
2.6  Line 5685 and line 5706 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  70.62  78.87  8.07
2.6  Line 5718 and line 5754 have the same coordinates.  (second line removed)
     A      X, Y, Z:  70.73  78.89  7.06
2.6  Line 5724 and line 5759 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  70.61  78.87  7.86
4.4  Line 2 of rad 2.55 links to 1 of rad 0.125.  (no action taken)
     B1      X, Y, Z:  85.14  84.32  4.67
4.4  Line 728 of rad 0.523 links to 727 of rad 0.227.  (no action taken)
     B1      X, Y, Z:  114.08  227.21  7.42
4.4  Line 771 of rad 0.299 links to 668 of rad 0.125.  (no action taken)
     B1      X, Y, Z:  114.38  224.78  7.3
2.1  Line 680 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  114.23  227.47  7.59
2.1  Line 1630 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  92.8  151.25  9.0
2.1  Line 1638 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  93.48  151.69  9.46
2.1  Line 1689 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  101.64  157.59  8.01
2.1  Line 2700 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  91.82  79.99  5.74
2.1  Line 2794 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  110.73  82.4  8.91
2.1  Line 3079 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  112.23  85.85  9.43
2.1  Line 3155 has 7 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  116.69  102.21  9.34
2.1  Line 3181 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  119.24  102.59  7.1
2.1  Line 3965 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  77.96  78.41  6.96
2.1  Line 3975 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  76.99  77.32  6.85
2.1  Line 4215 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  74.85  31.56  6.96
2.1  Line 5344 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  68.36  87.54  6.64
2.1  Line 5480 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  70.81  78.84  6.9
2.1  Line 5490 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  69.94  77.79  6.83
 
 


Number of type A irregularities = 46
Number of type B1 irregularities = 58
Number of type B2 irregularities = 0
Number of type C irregularities = 0
