# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\M16Neuron3Imaris.ims.swc.swc created with StdSwc version 1.31 on 12/11/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\M16Neuron3Imaris.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  102.2  75.03  4.5
4.3  Radius of line 2 at 2.55 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.12  75.01  4.5
4.3  Radius of line 3 at 2.55 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.04  74.99  4.51
4.3  Radius of line 4 at 2.55 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  101.89  74.95  4.52
4.3  Radius of line 5 at 2.55 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  101.59  74.88  4.54
4.3  Radius of line 470 at 9.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.2  75.03  4.5
4.3  Radius of line 471 at 4.682 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  101.65  75.15  4.56
4.3  Radius of line 1239 at 9.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.2  75.03  4.5
4.3  Radius of line 1240 at 5.683 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  101.83  75.38  4.58
4.3  Radius of line 1241 at 3.03 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  101.65  75.67  4.62
4.3  Radius of line 1603 at 9.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.2  75.03  4.5
4.3  Radius of line 1604 at 5.683 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.44  74.61  4.52
4.3  Radius of line 1605 at 3.03 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.65  74.35  4.52
4.5  Radius of terminal line 2658 at 0.837 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  127.41  18.9  6.13
4.3  Radius of line 2863 at 9.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.2  75.03  4.5
4.3  Radius of line 2864 at 5.683 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.32  75.11  4.56
4.3  Radius of line 2865 at 3.03 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.51  75.19  4.6
2.5  Seg length ending at pt. 2 <= 0.1 at 0.0825.  (removed)
     A       X, Y, Z:  102.12  75.01  4.5
2.5  Seg length ending at pt. 131 <= 0.1 at 0.0906.  (removed)
     A       X, Y, Z:  95.4  84.78  4.23
2.5  Seg length ending at pt. 349 <= 0.1 at 0.0539.  (removed)
     A       X, Y, Z:  96.27  62.65  4.29
2.5  Seg length ending at pt. 351 <= 0.1 at 0.0949.  (removed)
     A       X, Y, Z:  96.17  62.59  4.21
2.5  Seg length ending at pt. 363 <= 0.1 at 0.0949.  (removed)
     A       X, Y, Z:  96.17  62.59  4.21
2.5  Seg length ending at pt. 407 <= 0.1 at 0.0361.  (removed)
     A       X, Y, Z:  96.28  61.49  4.33
2.5  Seg length ending at pt. 409 <= 0.1 at 0.0707.  (removed)
     A       X, Y, Z:  96.28  61.56  4.26
2.5  Seg length ending at pt. 419 <= 0.1 at 0.0883.  (removed)
     A       X, Y, Z:  96.26  61.56  4.24
2.4  Seg length ending at pt. 471 >= 6.0 stdevs above mean at 0.5661.  (no action taken)
     B1      X, Y, Z:  101.65  75.15  4.56
2.5  Seg length ending at pt. 533 <= 0.1 at 0.0954.  (removed)
     A       X, Y, Z:  91.11  79.4  4.45
2.5  Seg length ending at pt. 699 <= 0.1 at 0.0819.  (removed)
     A       X, Y, Z:  77.08  87.51  5.35
2.5  Seg length ending at pt. 717 <= 0.1 at 0.0721.  (removed)
     A       X, Y, Z:  76.37  88.66  5.33
2.5  Seg length ending at pt. 793 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  89.85  77.81  4.93
2.5  Seg length ending at pt. 832 <= 0.1 at 0.097.  (removed)
     A       X, Y, Z:  87.28  77.91  5.72
2.5  Seg length ending at pt. 844 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  86.79  77.82  5.77
2.5  Seg length ending at pt. 846 <= 0.1 at 0.049.  (removed)
     A       X, Y, Z:  86.73  77.79  5.8
2.5  Seg length ending at pt. 904 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  86.62  77.68  5.74
2.5  Seg length ending at pt. 906 <= 0.1 at 0.0671.  (removed)
     A       X, Y, Z:  86.7  77.62  5.77
2.5  Seg length ending at pt. 910 <= 0.1 at 0.0854.  (removed)
     A       X, Y, Z:  86.73  77.63  5.75
2.5  Seg length ending at pt. 925 <= 0.1 at 0.0877.  (removed)
     A       X, Y, Z:  86.35  77.64  5.75
2.5  Seg length ending at pt. 1027 <= 0.1 at 0.0583.  (removed)
     A       X, Y, Z:  91.72  73.68  4.48
2.5  Seg length ending at pt. 1100 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  87.82  71.49  3.73
2.4  Seg length ending at pt. 1240 >= 6.0 stdevs above mean at 0.5156.  (no action taken)
     B1      X, Y, Z:  101.83  75.38  4.58
2.5  Seg length ending at pt. 1361 <= 0.1 at 0.0906.  (removed)
     A       X, Y, Z:  107.01  91.01  4.61
2.5  Seg length ending at pt. 1603 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  102.2  75.03  4.5
2.5  Seg length ending at pt. 1668 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  104.99  70.98  4.49
2.5  Seg length ending at pt. 1692 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  105.44  69.79  4.71
2.5  Seg length ending at pt. 1747 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  108.27  66.53  4.97
2.5  Seg length ending at pt. 1788 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  106.36  59.73  4.69
2.5  Seg length ending at pt. 1790 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  106.45  59.6  4.7
2.5  Seg length ending at pt. 1889 <= 0.1 at 0.0332.  (removed)
     A       X, Y, Z:  110.01  63.12  5.26
2.5  Seg length ending at pt. 1891 <= 0.1 at 0.0755.  (removed)
     A       X, Y, Z:  109.98  63.15  5.15
2.5  Seg length ending at pt. 1911 <= 0.1 at 0.0374.  (removed)
     A       X, Y, Z:  111.01  61.74  5.31
2.5  Seg length ending at pt. 1913 <= 0.1 at 0.0648.  (removed)
     A       X, Y, Z:  111.02  61.68  5.23
2.5  Seg length ending at pt. 1950 <= 0.1 at 0.0412.  (removed)
     A       X, Y, Z:  112.38  59.24  5.2
2.5  Seg length ending at pt. 1952 <= 0.1 at 0.0837.  (removed)
     A       X, Y, Z:  112.42  59.32  5.11
2.5  Seg length ending at pt. 2054 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  115.04  51.33  5.68
2.5  Seg length ending at pt. 2061 <= 0.1 at 0.0854.  (removed)
     A       X, Y, Z:  114.74  50.01  5.64
2.5  Seg length ending at pt. 2163 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  109.44  46.94  6.68
2.5  Seg length ending at pt. 2203 <= 0.1 at 0.0949.  (removed)
     A       X, Y, Z:  105.57  46.2  6.25
2.5  Seg length ending at pt. 2218 <= 0.1 at 0.0678.  (removed)
     A       X, Y, Z:  105.59  46.2  6.27
2.5  Seg length ending at pt. 2268 <= 0.1 at 0.0412.  (removed)
     A       X, Y, Z:  103.52  45.76  6.63
2.5  Seg length ending at pt. 2270 <= 0.1 at 0.0911.  (removed)
     A       X, Y, Z:  103.42  45.84  6.58
2.5  Seg length ending at pt. 2301 <= 0.1 at 0.0707.  (removed)
     A       X, Y, Z:  102.19  45.54  6.56
2.5  Seg length ending at pt. 2304 <= 0.1 at 0.0985.  (removed)
     A       X, Y, Z:  102.01  45.69  6.37
2.5  Seg length ending at pt. 2335 <= 0.1 at 0.0995.  (removed)
     A       X, Y, Z:  115.46  50.22  5.52
2.5  Seg length ending at pt. 2498 <= 0.1 at 0.0714.  (removed)
     A       X, Y, Z:  120.56  34.11  5.39
2.5  Seg length ending at pt. 2858 <= 0.1 at 0.07.  (removed)
     A       X, Y, Z:  111.82  71.96  4.42
2.5  Seg length ending at pt. 2863 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  102.2  75.03  4.5
2.5  Seg length ending at pt. 2908 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  105.36  76.03  4.31
2.5  Seg length ending at pt. 3032 <= 0.1 at 0.0447.  (removed)
     A       X, Y, Z:  115.29  86.58  4.27
2.5  Seg length ending at pt. 3034 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  115.13  86.57  4.28
2.5  Seg length ending at pt. 3098 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  113.92  76.89  3.67
2.5  Seg length ending at pt. 3100 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  113.91  76.89  3.69
2.5  Seg length ending at pt. 3102 <= 0.1 at 0.0678.  (removed)
     A       X, Y, Z:  113.86  76.88  3.79
2.5  Seg length ending at pt. 3106 <= 0.1 at 0.098.  (removed)
     A       X, Y, Z:  113.85  76.85  3.81
2.5  Seg length ending at pt. 3255 <= 0.1 at 0.0592.  (removed)
     A       X, Y, Z:  126.15  74.78  3.85
2.5  Seg length ending at pt. 3335 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  136.82  71.72  3.8
2.5  Seg length ending at pt. 3364 <= 0.1 at 0.0927.  (removed)
     A       X, Y, Z:  140.57  73.8  4.13
2.5  Seg length ending at pt. 408 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  96.28  61.51  4.31
2.5  Seg length ending at pt. 845 <= 0.1 at 0.0458.  (removed)
     A       X, Y, Z:  86.77  77.81  5.78
2.5  Seg length ending at pt. 905 <= 0.1 at 0.0671.  (removed)
     A       X, Y, Z:  86.65  77.66  5.75
2.5  Seg length ending at pt. 1890 <= 0.1 at 0.0755.  (removed)
     A       X, Y, Z:  110.0  63.13  5.22
2.5  Seg length ending at pt. 1912 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  111.01  61.72  5.28
2.5  Seg length ending at pt. 1951 <= 0.1 at 0.0837.  (removed)
     A       X, Y, Z:  112.39  59.27  5.17
2.5  Seg length ending at pt. 2269 <= 0.1 at 0.0877.  (removed)
     A       X, Y, Z:  103.49  45.79  6.61
2.5  Seg length ending at pt. 3099 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  113.92  76.89  3.68
2.5  Seg length ending at pt. 3101 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  113.89  76.89  3.73
2.6  Line 1 and line 470 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  102.2  75.03  4.5
2.6  Line 1 and line 1239 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  102.2  75.03  4.5
2.6  Line 359 and line 371 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  95.4  63.07  3.72
2.6  Line 410 and line 439 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  96.22  61.62  4.16
2.6  Line 470 and line 1239 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  102.2  75.03  4.5
4.4  Line 470 of rad 9.0 links to 4 of rad 2.55.  (no action taken)
     B1      X, Y, Z:  102.2  75.03  4.5
4.4  Line 1239 of rad 9.0 links to 3 of rad 2.55.  (no action taken)
     B1      X, Y, Z:  102.2  75.03  4.5
2.1  Line 1 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  102.2  75.03  4.5
2.1  Line 130 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  95.4  84.77  4.32
2.1  Line 348 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  96.31  62.67  4.32
2.1  Line 406 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  96.28  61.46  4.35
2.1  Line 698 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  77.11  87.58  5.32
2.1  Line 716 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  76.37  88.72  5.29
2.1  Line 792 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  89.79  77.88  4.92
2.1  Line 831 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  87.25  78.0  5.74
2.1  Line 843 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  86.81  77.82  5.76
2.1  Line 903 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  86.6  77.7  5.73
2.1  Line 924 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  86.39  77.58  5.7
2.1  Line 1026 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  91.69  73.64  4.45
2.1  Line 1099 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  87.86  71.46  3.69
2.1  Line 1360 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  107.04  90.93  4.64
2.1  Line 1667 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  104.91  70.96  4.5
2.1  Line 1691 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  105.51  69.8  4.73
2.1  Line 1746 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  108.23  66.57  4.98
2.1  Line 1787 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  106.35  59.79  4.68
2.1  Line 1888 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  110.02  63.11  5.29
2.1  Line 1910 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  111.0  61.76  5.34
2.1  Line 1949 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  112.36  59.21  5.22
2.1  Line 2053 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  115.02  51.39  5.68
2.1  Line 2060 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  114.77  50.01  5.72
2.1  Line 2267 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  103.55  45.74  6.65
2.1  Line 2300 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  102.22  45.5  6.61
2.1  Line 2497 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  120.57  34.1  5.32
2.1  Line 2907 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  105.34  76.0  4.26
2.1  Line 3097 has 6 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  113.93  76.89  3.66
2.1  Line 3254 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  126.2  74.75  3.84
2.1  Line 3363 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  140.56  73.86  4.2
 
 


Number of type A irregularities = 66
Number of type B1 irregularities = 56
Number of type B2 irregularities = 0
Number of type C irregularities = 0
