# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\M15Neuron4Imaris.ims.swc.swc created with StdSwc version 1.31 on 12/11/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\M15Neuron4Imaris.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  102.05  86.38  12.74
4.3  Radius of line 2 at 5.644 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.11  86.7  12.7
4.3  Radius of line 3 at 5.644 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.17  87.02  12.65
4.3  Radius of line 4 at 2.073 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.07  87.41  12.6
4.3  Radius of line 122 at 11.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.05  86.38  12.74
4.3  Radius of line 123 at 3.05 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.06  85.78  12.56
4.3  Radius of line 124 at 1.624 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  101.95  85.66  12.8
4.5  Radius of terminal line 785 at 0.899 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  75.45  48.05  22.1
4.5  Radius of terminal line 1910 at 0.433 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  62.07  91.07  21.4
4.3  Radius of line 2228 at 11.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.05  86.38  12.74
4.3  Radius of line 2229 at 3.05 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.44  86.51  12.72
4.3  Radius of line 2230 at 1.606 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.77  86.45  12.69
4.3  Radius of line 3667 at 1.624 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.77  86.66  12.71
4.5  Radius of terminal line 4867 at 0.477 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  38.37  96.24  15.55
2.4  Seg length ending at pt. 123 >= 6.0 stdevs above mean at 0.6265.  (no action taken)
     B1      X, Y, Z:  102.06  85.78  12.56
2.5  Seg length ending at pt. 191 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  93.0  77.63  22.56
2.5  Seg length ending at pt. 193 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  92.99  77.61  22.56
2.5  Seg length ending at pt. 195 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  92.99  77.54  22.56
2.5  Seg length ending at pt. 297 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  99.57  80.66  21.15
2.5  Seg length ending at pt. 318 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  99.69  80.4  21.21
2.5  Seg length ending at pt. 320 <= 0.1 at 0.0424.  (removed)
     A       X, Y, Z:  99.66  80.5  21.22
2.5  Seg length ending at pt. 428 <= 0.1 at 0.0656.  (removed)
     A       X, Y, Z:  100.79  70.34  20.21
2.5  Seg length ending at pt. 653 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  85.45  54.59  21.08
2.5  Seg length ending at pt. 768 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  75.73  48.14  22.09
2.5  Seg length ending at pt. 798 <= 0.1 at 0.0548.  (removed)
     A       X, Y, Z:  76.42  48.43  22.09
2.5  Seg length ending at pt. 806 <= 0.1 at 0.086.  (removed)
     A       X, Y, Z:  76.54  48.49  22.08
2.5  Seg length ending at pt. 964 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  80.83  83.6  20.35
2.5  Seg length ending at pt. 966 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  80.83  83.61  20.35
2.5  Seg length ending at pt. 968 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  80.84  83.62  20.37
2.5  Seg length ending at pt. 970 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  80.87  83.69  20.45
2.5  Seg length ending at pt. 1857 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  65.07  94.21  18.9
2.5  Seg length ending at pt. 1870 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  63.71  93.56  20.18
2.5  Seg length ending at pt. 1911 <= 0.1 at 0.0608.  (removed)
     A       X, Y, Z:  62.1  91.31  21.38
2.5  Seg length ending at pt. 1923 <= 0.1 at 0.0819.  (removed)
     A       X, Y, Z:  62.02  91.61  21.42
2.5  Seg length ending at pt. 1992 <= 0.1 at 0.0954.  (removed)
     A       X, Y, Z:  66.57  100.32  16.54
2.5  Seg length ending at pt. 2228 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  102.05  86.38  12.74
2.5  Seg length ending at pt. 2333 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  114.62  80.19  19.96
2.5  Seg length ending at pt. 2378 <= 0.1 at 0.0721.  (removed)
     A       X, Y, Z:  115.88  79.3  22.1
2.5  Seg length ending at pt. 2557 <= 0.1 at 0.0245.  (removed)
     A       X, Y, Z:  128.21  83.16  14.08
2.5  Seg length ending at pt. 2559 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  128.21  83.11  14.14
2.5  Seg length ending at pt. 3471 <= 0.1 at 0.0985.  (removed)
     A       X, Y, Z:  116.33  44.1  20.82
2.5  Seg length ending at pt. 3560 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  118.03  36.64  20.49
2.5  Seg length ending at pt. 3640 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  115.4  49.94  21.26
2.5  Seg length ending at pt. 3654 <= 0.1 at 0.06.  (removed)
     A       X, Y, Z:  114.49  51.1  20.82
2.5  Seg length ending at pt. 3783 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  93.31  103.19  21.41
2.5  Seg length ending at pt. 3885 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  93.66  104.45  19.31
2.5  Seg length ending at pt. 4010 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  88.53  101.64  19.58
2.5  Seg length ending at pt. 4309 <= 0.1 at 0.0825.  (removed)
     A       X, Y, Z:  68.25  112.06  18.62
2.5  Seg length ending at pt. 4389 <= 0.1 at 0.0583.  (removed)
     A       X, Y, Z:  59.22  118.18  19.19
2.5  Seg length ending at pt. 4466 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  55.4  122.06  19.78
2.5  Seg length ending at pt. 4584 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  57.32  109.33  19.04
2.5  Seg length ending at pt. 4586 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  57.32  109.33  19.04
2.5  Seg length ending at pt. 4588 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  57.33  109.33  19.04
2.5  Seg length ending at pt. 4590 <= 0.1 at 0.0245.  (removed)
     A       X, Y, Z:  57.34  109.32  19.07
2.5  Seg length ending at pt. 4592 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  57.4  109.31  19.19
2.5  Seg length ending at pt. 4678 <= 0.1 at 0.086.  (removed)
     A       X, Y, Z:  56.35  108.76  18.33
2.5  Seg length ending at pt. 4769 <= 0.1 at 0.0854.  (removed)
     A       X, Y, Z:  47.66  102.74  16.47
2.5  Seg length ending at pt. 5133 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  99.49  118.06  18.85
2.5  Seg length ending at pt. 5530 <= 0.1 at 0.0755.  (removed)
     A       X, Y, Z:  98.6  137.75  21.47
2.5  Seg length ending at pt. 5698 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  98.26  141.31  21.4
2.5  Seg length ending at pt. 5888 <= 0.1 at 0.0436.  (removed)
     A       X, Y, Z:  97.27  150.14  20.69
2.5  Seg length ending at pt. 5890 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  97.19  150.1  20.61
2.5  Seg length ending at pt. 5956 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  97.02  152.79  20.71
2.5  Seg length ending at pt. 6149 <= 0.1 at 0.0877.  (removed)
     A       X, Y, Z:  95.52  164.82  21.17
2.5  Seg length ending at pt. 6221 <= 0.1 at 0.07.  (removed)
     A       X, Y, Z:  94.39  168.43  21.43
2.5  Seg length ending at pt. 6368 <= 0.1 at 0.0283.  (removed)
     A       X, Y, Z:  93.03  176.63  21.8
2.5  Seg length ending at pt. 6370 <= 0.1 at 0.0781.  (removed)
     A       X, Y, Z:  93.11  176.72  21.8
2.5  Seg length ending at pt. 6654 <= 0.1 at 0.086.  (removed)
     A       X, Y, Z:  90.06  189.74  23.13
2.4  Seg length ending at pt. 6672 >= 6.0 stdevs above mean at 0.5325.  (no action taken)
     B1      X, Y, Z:  88.94  192.83  23.2
2.5  Seg length ending at pt. 6712 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  87.11  200.46  23.62
2.5  Seg length ending at pt. 6714 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  87.12  200.45  23.62
2.5  Seg length ending at pt. 6716 <= 0.1 at 0.02.  (removed)
     A       X, Y, Z:  87.12  200.43  23.62
2.5  Seg length ending at pt. 6718 <= 0.1 at 0.0412.  (removed)
     A       X, Y, Z:  87.14  200.37  23.61
2.5  Seg length ending at pt. 6789 <= 0.1 at 0.0877.  (removed)
     A       X, Y, Z:  87.06  200.96  23.56
2.5  Seg length ending at pt. 6796 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  86.94  201.18  23.56
2.5  Seg length ending at pt. 6798 <= 0.1 at 0.0714.  (removed)
     A       X, Y, Z:  86.92  201.29  23.54
2.5  Seg length ending at pt. 6828 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  88.91  194.24  23.54
2.4  Seg length ending at pt. 6846 >= 6.0 stdevs above mean at 0.6007.  (no action taken)
     B1      X, Y, Z:  88.72  194.78  23.25
2.4  Seg length ending at pt. 6857 >= 6.0 stdevs above mean at 7.2536.  (no action taken)
     B1      X, Y, Z:  88.54  194.32  23.28
2.4  Seg length ending at pt. 6862 >= 6.0 stdevs above mean at 0.6255.  (no action taken)
     B1      X, Y, Z:  88.82  194.72  23.31
2.5  Seg length ending at pt. 6955 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  88.46  191.89  20.93
2.5  Seg length ending at pt. 6957 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  88.53  192.01  20.89
2.5  Seg length ending at pt. 7011 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  87.18  192.19  19.04
2.5  Seg length ending at pt. 7035 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  87.1  192.2  18.8
2.5  Seg length ending at pt. 7587 <= 0.1 at 0.0539.  (removed)
     A       X, Y, Z:  140.02  134.78  10.63
2.5  Seg length ending at pt. 7617 <= 0.1 at 0.0583.  (removed)
     A       X, Y, Z:  136.8  131.07  10.17
2.5  Seg length ending at pt. 192 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  93.0  77.62  22.56
2.5  Seg length ending at pt. 321 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  99.7  80.52  21.24
2.5  Seg length ending at pt. 965 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  80.83  83.6  20.35
2.5  Seg length ending at pt. 969 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  80.85  83.64  20.4
2.5  Seg length ending at pt. 2558 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  128.21  83.14  14.1
2.5  Seg length ending at pt. 4585 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  57.32  109.33  19.04
2.5  Seg length ending at pt. 4589 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  57.33  109.33  19.05
2.5  Seg length ending at pt. 5889 <= 0.1 at 0.0872.  (removed)
     A       X, Y, Z:  97.24  150.13  20.66
2.5  Seg length ending at pt. 6369 <= 0.1 at 0.0707.  (removed)
     A       X, Y, Z:  93.06  176.66  21.8
2.5  Seg length ending at pt. 6713 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  87.11  200.46  23.62
2.5  Seg length ending at pt. 6717 <= 0.1 at 0.0424.  (removed)
     A       X, Y, Z:  87.13  200.41  23.61
2.5  Seg length ending at pt. 6797 <= 0.1 at 0.0714.  (removed)
     A       X, Y, Z:  86.93  201.22  23.55
2.5  Seg length ending at pt. 6829 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  88.89  194.32  23.51
2.5  Seg length ending at pt. 6956 <= 0.1 at 0.0964.  (removed)
     A       X, Y, Z:  88.48  191.93  20.92
2.5  Seg length ending at pt. 194 <= 0.1 at 0.0412.  (removed)
     A       X, Y, Z:  92.99  77.59  22.56
2.5  Seg length ending at pt. 967 <= 0.1 at 0.0173.  (removed)
     A       X, Y, Z:  80.84  83.61  20.36
2.5  Seg length ending at pt. 4587 <= 0.1 at 0.01.  (removed)
     A       X, Y, Z:  57.32  109.33  19.04
2.5  Seg length ending at pt. 6715 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  87.12  200.45  23.62
2.5  Seg length ending at pt. 4591 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  57.36  109.32  19.11
2.7  Line 785 of rad 0.899 is an included side branch.  (removed)
     A      X, Y, Z:  75.45  48.05  22.1
2.7  Line 1910 of rad 0.433 is an included side branch.  (removed)
     A      X, Y, Z:  62.07  91.07  21.4
2.7  Line 4498 of rad 0.266 is an included side branch.  (removed)
     A      X, Y, Z:  55.0  124.26  19.76
2.6  Line 1 and line 122 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  102.05  86.38  12.74
2.6  Line 988 and line 1024 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  81.03  83.96  20.69
2.6  Line 1013 and line 1024 have the same coordinates.  (second line removed)
     A      X, Y, Z:  80.91  83.76  20.54
2.6  Line 1934 and line 1944 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  61.66  91.48  21.54
2.6  Line 1935 and line 1945 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  61.43  91.47  21.61
2.6  Line 5700 and line 5707 have the same coordinates.  (second line removed)
     A      X, Y, Z:  98.25  141.15  21.64
2.6  Line 6730 and line 6744 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  87.2  200.21  23.56
4.4  Line 6653 of rad 0.4 links to 6642 of rad 0.188.  (no action taken)
     B1      X, Y, Z:  90.09  189.66  23.12
2.1  Line 190 has 7 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  93.0  77.63  22.56
2.1  Line 296 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  99.57  80.61  21.11
2.1  Line 427 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  100.74  70.37  20.24
2.1  Line 652 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  85.37  54.63  21.07
2.1  Line 797 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  76.47  48.45  22.08
2.1  Line 963 has 9 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  80.83  83.6  20.35
2.1  Line 1922 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  62.09  91.58  21.39
2.1  Line 1991 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  66.6  100.23  16.55
2.1  Line 2332 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  114.7  80.2  19.96
2.1  Line 2377 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  115.84  79.36  22.1
2.1  Line 2556 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  128.22  83.17  14.06
2.1  Line 3559 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  117.97  36.57  20.47
2.1  Line 3782 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  93.34  103.15  21.37
2.1  Line 3884 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  93.69  104.38  19.29
2.1  Line 4009 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  88.56  101.57  19.6
2.1  Line 4583 has 11 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  57.32  109.33  19.03
2.1  Line 4768 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  47.74  102.77  16.47
2.1  Line 5132 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  99.41  118.05  18.87
2.1  Line 5529 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  98.53  137.77  21.49
2.1  Line 5697 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  98.26  141.36  21.32
2.1  Line 5887 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  97.3  150.15  20.72
2.1  Line 5955 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  97.07  152.84  20.74
2.1  Line 6148 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  95.44  164.84  21.2
2.1  Line 6220 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  94.45  168.46  21.45
2.1  Line 6367 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  93.01  176.61  21.8
2.1  Line 6653 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  90.09  189.66  23.12
2.1  Line 6711 has 9 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  87.11  200.46  23.62
2.1  Line 6788 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  87.0  200.91  23.6
2.1  Line 6795 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  86.94  201.15  23.56
2.1  Line 6954 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  88.43  191.85  20.94
2.1  Line 7010 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  87.12  192.14  19.06
2.1  Line 7034 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  87.03  192.18  18.8
2.1  Line 7586 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  139.98  134.75  10.61
 
 


Number of type A irregularities = 91
Number of type B1 irregularities = 58
Number of type B2 irregularities = 0
Number of type C irregularities = 0
