# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\M13Neuron5Imaris.ims.swc.swc created with StdSwc version 1.31 on 12/11/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\M13Neuron5Imaris.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  70.56  77.37  5.32
4.3  Radius of line 2 at 2.3 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  70.68  77.42  5.3
4.3  Radius of line 3 at 2.3 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  70.8  77.48  5.29
4.3  Radius of line 4 at 2.3 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  71.04  77.59  5.25
4.3  Radius of line 252 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  70.56  77.37  5.32
4.3  Radius of line 253 at 4.091 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  70.98  77.18  5.21
4.3  Radius of line 254 at 1.487 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  71.24  76.99  5.16
4.3  Radius of line 977 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  70.56  77.37  5.32
4.3  Radius of line 978 at 2.3 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  70.61  76.9  5.13
4.3  Radius of line 1267 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  70.56  77.37  5.32
4.3  Radius of line 1268 at 2.3 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  70.62  77.56  5.29
4.5  Radius of terminal line 4722 at 0.481 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  110.74  123.5  10.23
2.5  Seg length ending at pt. 52 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  79.55  73.71  8.33
2.5  Seg length ending at pt. 112 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  80.18  71.49  9.08
2.5  Seg length ending at pt. 345 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  73.92  69.3  6.87
2.5  Seg length ending at pt. 370 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  74.49  66.38  7.43
2.5  Seg length ending at pt. 458 <= 0.1 at 0.0922.  (removed)
     A       X, Y, Z:  73.49  61.38  8.31
2.5  Seg length ending at pt. 551 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  74.91  51.88  9.67
2.5  Seg length ending at pt. 642 <= 0.1 at 0.0949.  (removed)
     A       X, Y, Z:  70.03  42.42  10.91
2.5  Seg length ending at pt. 658 <= 0.1 at 0.0436.  (removed)
     A       X, Y, Z:  69.73  42.13  11.0
2.5  Seg length ending at pt. 660 <= 0.1 at 0.0922.  (removed)
     A       X, Y, Z:  69.73  42.22  10.9
2.5  Seg length ending at pt. 751 <= 0.1 at 0.0906.  (removed)
     A       X, Y, Z:  80.73  53.79  9.76
2.5  Seg length ending at pt. 829 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  86.95  55.97  11.0
2.4  Seg length ending at pt. 978 >= 6.0 stdevs above mean at 0.5094.  (no action taken)
     B1      X, Y, Z:  70.61  76.9  5.13
2.5  Seg length ending at pt. 1267 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  70.56  77.37  5.32
2.5  Seg length ending at pt. 1591 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  29.02  84.65  8.85
2.5  Seg length ending at pt. 1593 <= 0.1 at 0.0781.  (removed)
     A       X, Y, Z:  29.05  84.63  8.71
2.5  Seg length ending at pt. 1969 <= 0.1 at 0.0883.  (removed)
     A       X, Y, Z:  62.41  94.71  8.96
2.5  Seg length ending at pt. 1986 <= 0.1 at 0.0781.  (removed)
     A       X, Y, Z:  62.39  94.7  8.96
2.5  Seg length ending at pt. 2017 <= 0.1 at 0.097.  (removed)
     A       X, Y, Z:  61.54  95.37  8.9
2.5  Seg length ending at pt. 2061 <= 0.1 at 0.086.  (removed)
     A       X, Y, Z:  62.71  99.17  8.78
2.5  Seg length ending at pt. 2109 <= 0.1 at 0.0539.  (removed)
     A       X, Y, Z:  59.22  97.91  9.51
2.5  Seg length ending at pt. 2111 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  59.28  97.99  9.41
2.5  Seg length ending at pt. 2148 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  58.53  98.56  9.98
2.5  Seg length ending at pt. 2150 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  58.56  98.67  9.98
2.5  Seg length ending at pt. 2153 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  58.52  98.65  9.96
2.5  Seg length ending at pt. 2199 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  56.37  98.22  10.44
2.5  Seg length ending at pt. 2217 <= 0.1 at 0.0949.  (removed)
     A       X, Y, Z:  56.17  98.23  10.51
2.5  Seg length ending at pt. 2998 <= 0.1 at 0.0985.  (removed)
     A       X, Y, Z:  79.67  84.95  7.57
2.5  Seg length ending at pt. 3035 <= 0.1 at 0.0648.  (removed)
     A       X, Y, Z:  83.46  85.31  7.75
2.5  Seg length ending at pt. 3161 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  90.43  87.96  9.77
2.5  Seg length ending at pt. 3191 <= 0.1 at 0.0548.  (removed)
     A       X, Y, Z:  91.08  87.97  9.9
2.5  Seg length ending at pt. 3222 <= 0.1 at 0.0849.  (removed)
     A       X, Y, Z:  91.53  87.87  9.96
2.5  Seg length ending at pt. 3297 <= 0.1 at 0.0964.  (removed)
     A       X, Y, Z:  97.28  84.33  10.52
2.5  Seg length ending at pt. 3330 <= 0.1 at 0.0283.  (removed)
     A       X, Y, Z:  97.43  80.98  11.2
2.5  Seg length ending at pt. 3332 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  97.5  81.05  11.18
2.5  Seg length ending at pt. 3466 <= 0.1 at 0.097.  (removed)
     A       X, Y, Z:  105.03  80.37  8.42
2.5  Seg length ending at pt. 3472 <= 0.1 at 0.1.  (removed)
     A       X, Y, Z:  105.09  80.46  8.45
2.5  Seg length ending at pt. 3594 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  114.15  74.53  8.52
2.5  Seg length ending at pt. 3622 <= 0.1 at 0.0825.  (removed)
     A       X, Y, Z:  115.98  73.51  8.28
2.5  Seg length ending at pt. 3695 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  97.79  87.26  9.9
2.5  Seg length ending at pt. 3722 <= 0.1 at 0.097.  (removed)
     A       X, Y, Z:  99.41  87.45  9.9
2.5  Seg length ending at pt. 3784 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  105.55  89.41  9.72
2.5  Seg length ending at pt. 3800 <= 0.1 at 0.0374.  (removed)
     A       X, Y, Z:  107.92  90.84  9.63
2.5  Seg length ending at pt. 3802 <= 0.1 at 0.0917.  (removed)
     A       X, Y, Z:  107.89  90.96  9.57
2.5  Seg length ending at pt. 3807 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  107.9  90.94  9.59
2.5  Seg length ending at pt. 3903 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  115.48  96.34  9.46
2.5  Seg length ending at pt. 3916 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  115.6  96.98  9.6
2.5  Seg length ending at pt. 3936 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  117.61  97.23  9.26
2.5  Seg length ending at pt. 3973 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  120.26  99.89  9.51
2.5  Seg length ending at pt. 4067 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  110.56  86.28  8.31
2.5  Seg length ending at pt. 4176 <= 0.1 at 0.0837.  (removed)
     A       X, Y, Z:  122.68  84.93  8.62
2.5  Seg length ending at pt. 4256 <= 0.1 at 0.0922.  (removed)
     A       X, Y, Z:  86.68  90.84  9.02
2.5  Seg length ending at pt. 4430 <= 0.1 at 0.0883.  (removed)
     A       X, Y, Z:  89.49  103.77  10.21
2.5  Seg length ending at pt. 4656 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  105.91  120.21  10.07
2.5  Seg length ending at pt. 552 <= 0.1 at 0.0964.  (removed)
     A       X, Y, Z:  74.87  51.86  9.66
2.5  Seg length ending at pt. 659 <= 0.1 at 0.0854.  (removed)
     A       X, Y, Z:  69.73  42.16  10.97
2.5  Seg length ending at pt. 2149 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  58.54  98.6  9.98
2.5  Seg length ending at pt. 3331 <= 0.1 at 0.0714.  (removed)
     A       X, Y, Z:  97.46  81.01  11.19
2.5  Seg length ending at pt. 3801 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  107.91  90.88  9.61
2.7  Line 4722 of rad 0.481 is an included side branch.  (removed)
     A      X, Y, Z:  110.74  123.5  10.23
2.6  Line 1 and line 252 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  70.56  77.37  5.32
2.6  Line 1 and line 977 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  70.56  77.37  5.32
2.6  Line 54 and line 63 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  79.73  73.82  8.38
2.6  Line 252 and line 977 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  70.56  77.37  5.32
2.6  Line 4723 and line 4729 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  110.64  123.58  10.25
4.4  Line 252 of rad 8.0 links to 3 of rad 2.3.  (no action taken)
     B1      X, Y, Z:  70.56  77.37  5.32
4.4  Line 977 of rad 8.0 links to 2 of rad 2.3.  (no action taken)
     B1      X, Y, Z:  70.56  77.37  5.32
4.4  Line 2016 of rad 0.4 links to 2013 of rad 0.144.  (no action taken)
     B1      X, Y, Z:  61.61  95.34  8.96
4.4  Line 3034 of rad 0.4 links to 3024 of rad 0.187.  (no action taken)
     B1      X, Y, Z:  83.51  85.3  7.79
4.4  Line 3383 of rad 0.4 links to 3380 of rad 0.144.  (no action taken)
     B1      X, Y, Z:  94.82  86.77  10.05
4.4  Line 3754 of rad 0.4 links to 3751 of rad 0.144.  (no action taken)
     B1      X, Y, Z:  102.83  88.03  9.95
4.4  Line 4610 of rad 0.4 links to 4606 of rad 0.144.  (no action taken)
     B1      X, Y, Z:  101.19  115.73  8.95
2.1  Line 51 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  79.49  73.68  8.3
2.1  Line 111 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  80.19  71.52  9.15
2.1  Line 369 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  74.41  66.36  7.44
2.1  Line 457 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  73.56  61.38  8.37
2.1  Line 550 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  74.95  51.91  9.68
2.1  Line 657 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  69.72  42.1  11.03
2.1  Line 750 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  80.76  53.87  9.73
2.1  Line 828 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  86.91  55.98  11.07
2.1  Line 2016 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  61.61  95.34  8.96
2.1  Line 2060 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  62.78  99.14  8.74
2.1  Line 2108 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  59.2  97.87  9.54
2.1  Line 2147 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  58.52  98.53  9.98
2.1  Line 2198 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  56.41  98.26  10.51
2.1  Line 2216 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  56.21  98.18  10.58
2.1  Line 3034 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  83.51  85.3  7.79
2.1  Line 3160 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  90.42  87.9  9.79
2.1  Line 3190 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  91.1  87.92  9.91
2.1  Line 3221 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  91.55  87.79  9.98
2.1  Line 3329 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  97.41  80.96  11.2
2.1  Line 3465 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  105.01  80.46  8.39
2.1  Line 3593 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  114.14  74.52  8.44
2.1  Line 3621 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  115.96  73.51  8.2
2.1  Line 3694 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  97.79  87.19  9.88
2.1  Line 3721 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  99.43  87.36  9.87
2.1  Line 3799 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  107.93  90.81  9.65
2.1  Line 3902 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  115.53  96.26  9.46
2.1  Line 3935 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  117.58  97.3  9.27
2.1  Line 3972 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  120.3  99.83  9.5
2.1  Line 4066 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  110.6  86.19  8.3
2.1  Line 4255 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  86.74  90.84  9.09
2.1  Line 4655 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  105.92  120.15  10.09
 
 


Number of type A irregularities = 58
Number of type B1 irregularities = 56
Number of type B2 irregularities = 0
Number of type C irregularities = 0
