# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\M12Neuron3Imaris.ims.swc.swc created with StdSwc version 1.31 on 12/11/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\M12Neuron3Imaris.ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  166.08  131.84  5.26
4.3  Radius of line 2 at 3.689 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  166.11  131.9  5.27
4.3  Radius of line 3 at 3.689 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  166.14  131.96  5.28
4.3  Radius of line 4 at 3.689 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  166.21  132.09  5.3
4.3  Radius of line 5 at 3.689 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  166.35  132.34  5.35
4.3  Radius of line 58 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  166.08  131.84  5.26
4.3  Radius of line 59 at 3.69 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  166.36  132.22  5.37
4.5  Radius of terminal line 451 at 0.51 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  176.25  167.06  13.44
4.5  Radius of terminal line 453 at 0.253 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  176.95  166.92  13.49
4.3  Radius of line 482 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  166.08  131.84  5.26
4.3  Radius of line 483 at 3.689 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  166.38  132.16  5.35
4.3  Radius of line 1027 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  166.08  131.84  5.26
4.3  Radius of line 1028 at 3.689 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  165.94  132.42  5.33
4.5  Radius of terminal line 1807 at 0.352 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  96.26  183.56  13.44
4.3  Radius of line 3824 at 8.0 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  166.08  131.84  5.26
4.3  Radius of line 3825 at 2.3 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  166.34  132.0  5.29
2.5  Seg length ending at pt. 2 <= 0.1 at 0.0678.  (removed)
     A       X, Y, Z:  166.11  131.9  5.27
2.5  Seg length ending at pt. 459 <= 0.1 at 0.0678.  (removed)
     A       X, Y, Z:  176.61  166.45  13.6
2.5  Seg length ending at pt. 753 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  182.83  129.58  9.04
2.5  Seg length ending at pt. 875 <= 0.1 at 0.0894.  (removed)
     A       X, Y, Z:  196.61  123.38  8.77
2.5  Seg length ending at pt. 1027 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  166.08  131.84  5.26
2.4  Seg length ending at pt. 1028 >= 6.0 stdevs above mean at 0.6007.  (no action taken)
     B1      X, Y, Z:  165.94  132.42  5.33
2.5  Seg length ending at pt. 1793 <= 0.1 at 0.0728.  (removed)
     A       X, Y, Z:  96.08  182.69  13.68
2.5  Seg length ending at pt. 1876 <= 0.1 at 0.0787.  (removed)
     A       X, Y, Z:  93.94  171.57  9.18
2.5  Seg length ending at pt. 2609 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  42.39  193.89  14.25
2.5  Seg length ending at pt. 2646 <= 0.1 at 0.0883.  (removed)
     A       X, Y, Z:  40.5  193.37  13.94
2.5  Seg length ending at pt. 2709 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  36.99  190.46  11.75
2.5  Seg length ending at pt. 2711 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  37.06  190.5  11.78
2.5  Seg length ending at pt. 2851 <= 0.1 at 0.064.  (removed)
     A       X, Y, Z:  28.81  188.95  12.16
2.5  Seg length ending at pt. 2878 <= 0.1 at 0.0458.  (removed)
     A       X, Y, Z:  28.17  189.14  11.98
2.5  Seg length ending at pt. 2880 <= 0.1 at 0.0849.  (removed)
     A       X, Y, Z:  28.14  189.11  12.1
2.5  Seg length ending at pt. 3170 <= 0.1 at 0.0943.  (removed)
     A       X, Y, Z:  23.46  198.4  14.22
2.5  Seg length ending at pt. 3274 <= 0.1 at 0.0412.  (removed)
     A       X, Y, Z:  25.89  203.68  15.42
2.5  Seg length ending at pt. 3276 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  25.86  203.58  15.44
2.5  Seg length ending at pt. 3329 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  25.08  204.16  15.64
2.5  Seg length ending at pt. 3354 <= 0.1 at 0.0949.  (removed)
     A       X, Y, Z:  23.79  204.17  15.9
2.5  Seg length ending at pt. 3399 <= 0.1 at 0.0469.  (removed)
     A       X, Y, Z:  21.28  204.84  15.9
2.5  Seg length ending at pt. 3482 <= 0.1 at 0.0671.  (removed)
     A       X, Y, Z:  18.94  206.04  15.93
2.5  Seg length ending at pt. 3632 <= 0.1 at 0.0424.  (removed)
     A       X, Y, Z:  12.56  210.71  17.11
2.5  Seg length ending at pt. 3634 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  12.53  210.6  17.1
2.5  Seg length ending at pt. 3693 <= 0.1 at 0.0854.  (removed)
     A       X, Y, Z:  10.22  211.59  17.63
2.5  Seg length ending at pt. 3721 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  52.16  191.45  12.98
2.5  Seg length ending at pt. 3824 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  166.08  131.84  5.26
2.5  Seg length ending at pt. 3902 <= 0.1 at 0.02.  (removed)
     A       X, Y, Z:  171.48  125.13  10.61
2.5  Seg length ending at pt. 3904 <= 0.1 at 0.03.  (removed)
     A       X, Y, Z:  171.48  125.14  10.66
2.5  Seg length ending at pt. 2710 <= 0.1 at 0.0548.  (removed)
     A       X, Y, Z:  37.01  190.47  11.76
2.5  Seg length ending at pt. 2879 <= 0.1 at 0.0877.  (removed)
     A       X, Y, Z:  28.16  189.13  12.02
2.5  Seg length ending at pt. 3275 <= 0.1 at 0.0735.  (removed)
     A       X, Y, Z:  25.88  203.65  15.43
2.5  Seg length ending at pt. 3400 <= 0.1 at 0.0938.  (removed)
     A       X, Y, Z:  21.25  204.82  15.87
2.5  Seg length ending at pt. 3633 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  12.55  210.67  17.11
2.5  Seg length ending at pt. 3903 <= 0.1 at 0.0412.  (removed)
     A       X, Y, Z:  171.48  125.14  10.63
2.7  Line 451 of rad 0.51 is an included side branch.  (removed)
     A      X, Y, Z:  176.25  167.06  13.44
2.6  Line 1 and line 58 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  166.08  131.84  5.26
2.6  Line 1 and line 482 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  166.08  131.84  5.26
2.6  Line 58 and line 482 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  166.08  131.84  5.26
2.6  Line 3906 and line 3923 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  171.49  125.19  10.84
4.4  Line 58 of rad 8.0 links to 4 of rad 3.689.  (no action taken)
     B1      X, Y, Z:  166.08  131.84  5.26
4.4  Line 482 of rad 8.0 links to 3 of rad 3.689.  (no action taken)
     B1      X, Y, Z:  166.08  131.84  5.26
2.1  Line 1 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  166.08  131.84  5.26
2.1  Line 752 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  182.91  129.59  9.05
2.1  Line 1792 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  96.08  182.62  13.7
2.1  Line 1875 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  93.97  171.64  9.2
2.1  Line 2608 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  42.43  193.98  14.24
2.1  Line 2645 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  40.55  193.39  13.87
2.1  Line 2708 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  36.96  190.45  11.75
2.1  Line 2850 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  28.83  188.94  12.1
2.1  Line 2877 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  28.18  189.16  11.94
2.1  Line 3169 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  23.55  198.38  14.2
2.1  Line 3273 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  25.9  203.72  15.42
2.1  Line 3353 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  23.84  204.25  15.91
2.1  Line 3398 has 4 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  21.31  204.86  15.93
2.1  Line 3481 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  18.99  206.08  15.95
2.1  Line 3631 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  12.57  210.75  17.12
2.1  Line 3692 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  10.25  211.67  17.63
2.1  Line 3901 has 5 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  171.48  125.13  10.59
 
 


Number of type A irregularities = 35
Number of type B1 irregularities = 40
Number of type B2 irregularities = 0
Number of type C irregularities = 0
