# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\Park_et_al2019NatBiotech_PVGpe_neuron.swc.swc created with StdSwc version 1.31 on 5/24/19.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\Park_et_al2019NatBiotech_PVGpe_neuron.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 2.  (no action taken)
     B1      X, Y, Z:  2976.01  9013.85  951.83
4.3  Radius of line 3781 at 16.735 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4033.51  9149.12  1389.33
4.3  Radius of line 3782 at 16.947 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4034.03  9148.45  1389.46
4.3  Radius of line 3783 at 16.948 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4034.25  9147.25  1389.18
4.3  Radius of line 3784 at 16.922 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4034.42  9145.75  1388.71
4.3  Radius of line 3785 at 17.027 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4034.69  9144.07  1388.08
4.3  Radius of line 3786 at 17.215 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4035.03  9142.3  1387.19
4.3  Radius of line 3787 at 17.428 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4035.44  9140.54  1385.95
4.3  Radius of line 3788 at 17.62 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4035.88  9138.8  1384.44
4.3  Radius of line 3789 at 17.616 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4036.4  9137.1  1382.78
4.3  Radius of line 3790 at 17.327 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4037.03  9135.39  1381.09
4.3  Radius of line 3791 at 16.891 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4037.76  9133.7  1379.36
4.3  Radius of line 3792 at 16.329 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4038.57  9132.03  1377.53
4.3  Radius of line 3793 at 15.653 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4039.51  9130.21  1375.71
4.3  Radius of line 3794 at 14.976 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4040.73  9128.12  1373.97
4.3  Radius of line 3795 at 14.322 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4042.32  9125.73  1372.33
4.3  Radius of line 3806 at 13.963 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4059.21  9091.01  1357.48
4.3  Radius of line 3807 at 14.209 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4060.38  9088.12  1356.9
4.3  Radius of line 3808 at 14.138 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4061.55  9085.39  1356.42
4.3  Radius of line 3809 at 13.799 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4062.9  9082.86  1355.9
4.3  Radius of line 3825 at 13.656 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4063.76  9047.62  1348.36
4.3  Radius of line 3826 at 14.399 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4063.4  9045.76  1347.91
4.3  Radius of line 3827 at 15.1 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4063.13  9043.87  1347.48
4.3  Radius of line 3828 at 15.779 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4062.84  9041.98  1347.03
4.3  Radius of line 3829 at 16.546 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4062.55  9040.13  1346.49
4.3  Radius of line 3830 at 17.202 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4062.28  9038.31  1345.82
4.3  Radius of line 3831 at 16.478 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4062.17  9036.44  1345.26
4.3  Radius of line 3832 at 14.291 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4062.23  9034.45  1344.96
4.3  Radius of line 3910 at 14.53 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4135.94  8815.26  1356.21
4.3  Radius of line 3911 at 15.305 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4137.18  8811.59  1356.03
4.3  Radius of line 3912 at 15.453 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4138.6  8807.71  1355.58
4.3  Radius of line 3913 at 14.667 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4140.06  8803.61  1354.84
4.5  Radius of terminal line 9927 at 7.602 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  4499.23  3034.01  697.0
2.4  Seg length ending at pt. 6 >= 6.0 stdevs above mean at 23.997.  (no action taken)
     B1      X, Y, Z:  2989.59  8994.32  994.25
2.4  Seg length ending at pt. 1232 >= 6.0 stdevs above mean at 36.7859.  (no action taken)
     B1      X, Y, Z:  2972.78  10343.0  1836.0
2.4  Seg length ending at pt. 1617 >= 6.0 stdevs above mean at 33.4427.  (no action taken)
     B1      X, Y, Z:  3125.23  10410.7  1622.0
2.4  Seg length ending at pt. 2165 >= 6.0 stdevs above mean at 34.854.  (no action taken)
     B1      X, Y, Z:  2957.5  10309.7  1873.0
2.4  Seg length ending at pt. 2663 >= 6.0 stdevs above mean at 14.6089.  (no action taken)
     B1      X, Y, Z:  3255.25  10208.6  1931.75
2.4  Seg length ending at pt. 2664 >= 6.0 stdevs above mean at 25.9547.  (no action taken)
     B1      X, Y, Z:  3281.13  10207.7  1933.5
2.4  Seg length ending at pt. 2665 >= 6.0 stdevs above mean at 14.2522.  (no action taken)
     B1      X, Y, Z:  3294.94  10207.3  1937.0
2.4  Seg length ending at pt. 2851 >= 6.0 stdevs above mean at 22.6117.  (no action taken)
     B1      X, Y, Z:  3754.32  10262.4  1927.0
2.4  Seg length ending at pt. 3592 >= 6.0 stdevs above mean at 40.113.  (no action taken)
     B1      X, Y, Z:  3801.65  9319.54  2137.0
2.4  Seg length ending at pt. 3931 >= 6.0 stdevs above mean at 16.6173.  (no action taken)
     B1      X, Y, Z:  4155.3  8736.75  1355.5
2.4  Seg length ending at pt. 5159 >= 6.0 stdevs above mean at 24.3961.  (no action taken)
     B1      X, Y, Z:  4791.93  5841.76  1237.0
2.5  Seg length ending at pt. 5472 <= 0.1 at 0.0812.  (removed)
     A       X, Y, Z:  4772.52  5227.73  957.0
2.4  Seg length ending at pt. 6452 >= 6.0 stdevs above mean at 41.6856.  (no action taken)
     B1      X, Y, Z:  4439.35  3109.03  333.61
2.4  Seg length ending at pt. 6453 >= 6.0 stdevs above mean at 16.1903.  (no action taken)
     B1      X, Y, Z:  4427.06  3103.73  324.5
2.4  Seg length ending at pt. 6881 >= 6.0 stdevs above mean at 34.3741.  (no action taken)
     B1      X, Y, Z:  4325.06  3019.53  465.0
2.4  Seg length ending at pt. 6921 >= 6.0 stdevs above mean at 33.1163.  (no action taken)
     B1      X, Y, Z:  4304.93  2970.34  538.0
2.4  Seg length ending at pt. 7960 >= 6.0 stdevs above mean at 11.7725.  (no action taken)
     B1      X, Y, Z:  3763.38  2215.05  239.43
2.4  Seg length ending at pt. 7969 >= 6.0 stdevs above mean at 23.0639.  (no action taken)
     B1      X, Y, Z:  3768.15  2229.19  205.89
2.4  Seg length ending at pt. 8068 >= 6.0 stdevs above mean at 83.2554.  (no action taken)
     B1      X, Y, Z:  3767.84  2242.15  171.0
2.4  Seg length ending at pt. 8433 >= 6.0 stdevs above mean at 15.247.  (no action taken)
     B1      X, Y, Z:  4385.28  5348.43  949.0
2.5  Seg length ending at pt. 8946 <= 0.1 at 0.0768.  (removed)
     A       X, Y, Z:  4666.84  4530.02  908.99
2.4  Seg length ending at pt. 10114 >= 6.0 stdevs above mean at 13.6117.  (no action taken)
     B1      X, Y, Z:  4508.47  3090.3  751.46
2.4  Seg length ending at pt. 10118 >= 6.0 stdevs above mean at 20.8661.  (no action taken)
     B1      X, Y, Z:  4514.22  3084.01  779.0
2.4  Seg length ending at pt. 10165 >= 6.0 stdevs above mean at 12.8466.  (no action taken)
     B1      X, Y, Z:  4516.35  3036.17  893.5
2.4  Seg length ending at pt. 10181 >= 6.0 stdevs above mean at 11.8091.  (no action taken)
     B1      X, Y, Z:  4525.18  3005.98  934.0
2.4  Seg length ending at pt. 11086 >= 6.0 stdevs above mean at 18.9.  (no action taken)
     B1      X, Y, Z:  4458.81  3595.36  633.0
2.4  Seg length ending at pt. 12841 >= 6.0 stdevs above mean at 13.4047.  (no action taken)
     B1      X, Y, Z:  3193.42  3662.71  1341.5
2.4  Seg length ending at pt. 12963 >= 6.0 stdevs above mean at 15.7142.  (no action taken)
     B1      X, Y, Z:  3364.51  3963.67  1362.5
2.4  Seg length ending at pt. 13906 >= 6.0 stdevs above mean at 39.7464.  (no action taken)
     B1      X, Y, Z:  4022.92  6193.9  1634.0
2.4  Seg length ending at pt. 14329 >= 6.0 stdevs above mean at 18.7733.  (no action taken)
     B1      X, Y, Z:  4110.61  3527.65  685.62
2.4  Seg length ending at pt. 14805 >= 6.0 stdevs above mean at 21.3396.  (no action taken)
     B1      X, Y, Z:  4510.72  3497.09  745.5
2.4  Seg length ending at pt. 15243 >= 6.0 stdevs above mean at 14.1295.  (no action taken)
     B1      X, Y, Z:  4420.46  3984.82  1010.52
2.4  Seg length ending at pt. 15409 >= 6.0 stdevs above mean at 17.2418.  (no action taken)
     B1      X, Y, Z:  4394.81  4009.11  1409.44
2.4  Seg length ending at pt. 15883 >= 6.0 stdevs above mean at 15.8035.  (no action taken)
     B1      X, Y, Z:  4251.02  3966.63  1709.0
2.4  Seg length ending at pt. 15884 >= 6.0 stdevs above mean at 20.3366.  (no action taken)
     B1      X, Y, Z:  4239.14  3967.07  1692.5
2.4  Seg length ending at pt. 16160 >= 6.0 stdevs above mean at 24.5008.  (no action taken)
     B1      X, Y, Z:  3338.23  9636.87  1453.0
2.4  Seg length ending at pt. 16180 >= 6.0 stdevs above mean at 23.148.  (no action taken)
     B1      X, Y, Z:  3291.94  9612.04  1395.0
2.4  Seg length ending at pt. 16270 >= 6.0 stdevs above mean at 31.4864.  (no action taken)
     B1      X, Y, Z:  3336.32  9657.63  1305.0
2.5  Seg length ending at pt. 16287 <= 0.1 at 0.0721.  (removed)
     A       X, Y, Z:  3377.76  9669.38  1283.0
2.5  Seg length ending at pt. 16314 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  3412.88  9686.44  1253.73
2.4  Seg length ending at pt. 17535 >= 6.0 stdevs above mean at 12.3029.  (no action taken)
     B1      X, Y, Z:  3228.21  9164.64  857.5
2.4  Seg length ending at pt. 17717 >= 6.0 stdevs above mean at 59.6281.  (no action taken)
     B1      X, Y, Z:  3277.84  9068.47  709.0
2.4  Seg length ending at pt. 17973 >= 6.0 stdevs above mean at 21.0188.  (no action taken)
     B1      X, Y, Z:  2958.51  9369.42  383.0
2.4  Seg length ending at pt. 18130 >= 6.0 stdevs above mean at 27.2617.  (no action taken)
     B1      X, Y, Z:  3053.46  9399.85  343.87
2.5  Seg length ending at pt. 18435 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  2976.01  9013.85  951.83
2.7  Line 6742 of rad 3.106 is an included side branch.  (removed)
     A      X, Y, Z:  4440.75  2977.5  403.0
2.7  Line 10015 of rad 1.82 is an included side branch.  (removed)
     A      X, Y, Z:  4499.77  3056.28  876.12
2.6  Line 15409 and line 15597 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  4394.81  4009.11  1409.44
4.4  Line 1850 of rad 5.608 links to 1849 of rad 1.733.  (no action taken)
     B1      X, Y, Z:  3605.71  10529.0  1284.0
4.4  Line 3781 of rad 16.735 links to 3780 of rad 3.07.  (no action taken)
     B1      X, Y, Z:  4033.51  9149.12  1389.33
4.4  Line 6921 of rad 2.334 links to 6920 of rad 0.676.  (no action taken)
     B1      X, Y, Z:  4304.93  2970.34  538.0
4.4  Line 7279 of rad 5.155 links to 7278 of rad 1.73.  (no action taken)
     B1      X, Y, Z:  4018.84  2596.03  306.71
4.4  Line 9225 of rad 5.13 links to 9224 of rad 1.942.  (no action taken)
     B1      X, Y, Z:  4595.81  4082.19  844.95
4.4  Line 9410 of rad 6.218 links to 9409 of rad 3.018.  (no action taken)
     B1      X, Y, Z:  4607.31  3772.28  619.16
4.4  Line 15409 of rad 1.942 links to 15408 of rad 0.869.  (no action taken)
     B1      X, Y, Z:  4394.81  4009.11  1409.44
4.4  Line 15823 of rad 4.528 links to 15822 of rad 1.942.  (no action taken)
     B1      X, Y, Z:  4305.18  3935.73  1664.66
4.4  Line 16286 of rad 3.07 links to 16285 of rad 1.302.  (no action taken)
     B1      X, Y, Z:  3377.8  9669.38  1282.94
4.4  Line 16439 of rad 6.877 links to 16438 of rad 1.733.  (no action taken)
     B1      X, Y, Z:  2695.26  9326.79  1303.82
 
 


Number of type A irregularities = 7
Number of type B1 irregularities = 84
Number of type B2 irregularities = 0
Number of type C irregularities = 0
