# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\cell-16-TX_RV_Biocytin_25X_-ims.swc.swc created with StdSwc version 1.31 on 4/30/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\cell-16-TX_RV_Biocytin_25X_-ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  78.88  244.5  31.71
4.3  Radius of line 861 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  129.75  207.37  21.54
4.3  Radius of line 862 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  130.75  206.53  21.15
4.3  Radius of line 863 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  131.71  205.65  20.73
4.3  Radius of line 1466 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  131.71  205.65  20.73
4.3  Radius of line 1468 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  137.03  202.2  18.54
4.3  Radius of line 1469 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  135.82  202.64  19.0
4.3  Radius of line 1470 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  134.68  203.23  19.44
4.3  Radius of line 1471 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  133.63  203.95  19.87
4.3  Radius of line 1472 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  132.65  204.77  20.3
4.3  Radius of line 1473 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  131.71  205.65  20.73
4.3  Radius of line 2534 at 3.8587 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  164.88  244.23  2.88
4.3  Radius of line 3549 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  112.09  318.77  56.49
4.3  Radius of line 3851 at 3.91648 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  103.14  255.2  18.87
4.3  Radius of line 3852 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.28  255.86  18.71
4.3  Radius of line 4025 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  63.63  300.48  14.61
4.3  Radius of line 4242 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  133.81  234.63  16.69
4.3  Radius of line 4280 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  129.75  249.72  16.43
4.3  Radius of line 4281 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  129.28  250.94  16.51
4.3  Radius of line 4282 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  128.8  252.13  16.7
4.3  Radius of line 4283 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  128.29  253.3  16.95
4.3  Radius of line 4284 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  127.76  254.46  17.23
4.3  Radius of line 4568 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.98  348.8  22.41
4.3  Radius of line 4569 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.6  350.03  22.78
4.3  Radius of line 5291 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  120.58  203.25  27.52
4.3  Radius of line 5292 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  119.31  203.55  27.8
4.3  Radius of line 5293 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  118.03  203.81  28.04
4.3  Radius of line 5294 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  116.76  204.04  28.25
4.3  Radius of line 5295 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  115.5  204.25  28.46
4.3  Radius of line 5296 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  114.25  204.46  28.63
4.3  Radius of line 5297 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  112.99  204.66  28.72
4.3  Radius of line 5298 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  111.73  204.9  28.76
4.3  Radius of line 5347 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.77  210.35  29.73
4.3  Radius of line 5578 at 5.4848 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  27.29  243.09  50.05
2.5  Seg length ending at pt. 659 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  78.88  244.5  31.71
2.5  Seg length ending at pt. 1466 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  131.71  205.65  20.73
2.4  Seg length ending at pt. 1467 >= 6.0 stdevs above mean at 8.0289.  (no action taken)
     B1      X, Y, Z:  138.28  201.9  18.04
2.5  Seg length ending at pt. 1474 <= 0.1 at 0.0283.  (removed)
     A       X, Y, Z:  138.3  201.92  18.04
2.5  Seg length ending at pt. 2462 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  164.23  235.12  5.61
2.4  Seg length ending at pt. 2463 >= 6.0 stdevs above mean at 4.6944.  (no action taken)
     B1      X, Y, Z:  164.45  239.45  3.81
2.4  Seg length ending at pt. 2464 >= 6.0 stdevs above mean at 4.6978.  (no action taken)
     B1      X, Y, Z:  164.66  243.78  2.0
2.4  Seg length ending at pt. 2533 >= 6.0 stdevs above mean at 4.6978.  (no action taken)
     B1      X, Y, Z:  164.66  243.78  2.0
2.5  Seg length ending at pt. 2928 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  151.29  195.05  15.15
2.5  Seg length ending at pt. 3249 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  109.94  296.74  36.99
2.4  Seg length ending at pt. 3549 >= 6.0 stdevs above mean at 1.9171.  (no action taken)
     B1      X, Y, Z:  112.09  318.77  56.49
2.5  Seg length ending at pt. 3721 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  136.79  224.62  16.02
2.5  Seg length ending at pt. 4822 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  131.27  244.36  16.03
2.4  Seg length ending at pt. 5240 >= 6.0 stdevs above mean at 7.4955.  (no action taken)
     B1      X, Y, Z:  137.64  201.58  18.62
2.4  Seg length ending at pt. 5418 >= 6.0 stdevs above mean at 1.7546.  (no action taken)
     B1      X, Y, Z:  73.85  219.86  34.56
2.5  Seg length ending at pt. 5777 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  9.56  253.11  65.47
2.5  Seg length ending at pt. 1475 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  138.28  201.9  18.04
2.7  Line 2461 of rad 0.986485 is an included side branch.  (removed)
     A      X, Y, Z:  164.23  235.12  5.61
2.6  Line 1 and line 366 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  78.88  244.5  31.71
2.6  Line 863 and line 1473 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  131.71  205.65  20.73
2.6  Line 1220 and line 1359 have the same coordinates.  (second line removed)
     A      X, Y, Z:  87.18  310.16  50.96
2.6  Line 2464 and line 2534 have the same coordinates.  (second line removed)
     A      X, Y, Z:  164.66  243.78  2.0
2.6  Line 2464 and line 2927 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  164.66  243.78  2.0
2.6  Line 2968 and line 3669 have the same coordinates.  (second line removed)
     A      X, Y, Z:  146.29  209.48  18.62
2.6  Line 3248 and line 3464 have the same coordinates.  (second line removed)
     A      X, Y, Z:  109.94  296.74  36.99
2.6  Line 4489 and line 4666 have the same coordinates.  (second line removed)
     A      X, Y, Z:  110.04  322.04  19.29
4.4  Line 90 of rad 1.8306 links to 89 of rad 0.61253.  (no action taken)
     B1      X, Y, Z:  62.55  267.95  39.36
4.4  Line 861 of rad 5.4848 links to 860 of rad 1.8306.  (no action taken)
     B1      X, Y, Z:  129.75  207.37  21.54
4.4  Line 1095 of rad 1.66151 links to 1094 of rad 0.556845.  (no action taken)
     B1      X, Y, Z:  112.79  279.45  41.14
4.4  Line 1359 of rad 1.12432 links to 1219 of rad 0.558245.  (no action taken)
     B1      X, Y, Z:  87.66  310.7  51.84
4.4  Line 1468 of rad 5.4848 links to 1467 of rad 0.81528.  (no action taken)
     B1      X, Y, Z:  137.03  202.2  18.54
4.4  Line 1633 of rad 1.74762 links to 1632 of rad 0.81528.  (no action taken)
     B1      X, Y, Z:  173.83  162.15  10.97
4.4  Line 2534 of rad 3.8587 links to 2463 of rad 1.44431.  (no action taken)
     B1      X, Y, Z:  164.88  244.23  2.88
4.4  Line 2767 of rad 1.74762 links to 2766 of rad 0.418366.  (no action taken)
     B1      X, Y, Z:  139.95  333.0  10.68
4.4  Line 2861 of rad 0.865495 links to 2860 of rad 0.418366.  (no action taken)
     B1      X, Y, Z:  129.82  367.84  16.01
4.4  Line 3549 of rad 5.4848 links to 3548 of rad 0.506225.  (no action taken)
     B1      X, Y, Z:  112.09  318.77  56.49
4.4  Line 3711 of rad 1.08513 links to 3710 of rad 0.360517.  (no action taken)
     B1      X, Y, Z:  137.62  221.57  16.35
4.4  Line 3850 of rad 2.20346 links to 3849 of rad 0.345758.  (no action taken)
     B1      X, Y, Z:  103.99  254.58  19.13
4.4  Line 3945 of rad 1.63051 links to 3944 of rad 0.345758.  (no action taken)
     B1      X, Y, Z:  79.81  279.31  17.6
4.4  Line 4025 of rad 5.4848 links to 4024 of rad 0.345758.  (no action taken)
     B1      X, Y, Z:  63.63  300.48  14.61
4.4  Line 4242 of rad 5.4848 links to 4241 of rad 0.61253.  (no action taken)
     B1      X, Y, Z:  133.81  234.63  16.69
4.4  Line 4280 of rad 5.4848 links to 4279 of rad 0.61253.  (no action taken)
     B1      X, Y, Z:  129.75  249.72  16.43
4.4  Line 4568 of rad 5.4848 links to 4567 of rad 0.673785.  (no action taken)
     B1      X, Y, Z:  105.98  348.8  22.41
4.4  Line 5291 of rad 5.4848 links to 5290 of rad 0.74116.  (no action taken)
     B1      X, Y, Z:  120.58  203.25  27.52
4.4  Line 5347 of rad 5.4848 links to 5346 of rad 0.74116.  (no action taken)
     B1      X, Y, Z:  95.77  210.35  29.73
4.4  Line 5578 of rad 5.4848 links to 5577 of rad 0.74116.  (no action taken)
     B1      X, Y, Z:  27.29  243.09  50.05
 
 


Number of type A irregularities = 16
Number of type B1 irregularities = 64
Number of type B2 irregularities = 0
Number of type C irregularities = 0
