# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\cell-109-16519_S4_NoBiocytin_25x-ims.swc.swc created with StdSwc version 1.31 on 4/30/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\cell-109-16519_S4_NoBiocytin_25x-ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  132.15  177.2  77.39
4.3  Radius of line 3083 at 1.41457 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  77.75  180.52  69.01
4.3  Radius of line 3084 at 1.4977 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  77.44  180.58  69.02
4.3  Radius of line 3085 at 1.54885 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  77.12  180.62  69.04
4.3  Radius of line 3086 at 1.57443 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  76.8  180.64  69.09
4.3  Radius of line 3087 at 1.58466 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  76.48  180.66  69.16
4.3  Radius of line 3088 at 1.58786 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  76.17  180.69  69.22
4.3  Radius of line 3089 at 1.58861 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  75.86  180.72  69.29
4.3  Radius of line 3090 at 1.58873 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  75.55  180.73  69.35
4.3  Radius of line 3091 at 1.58875 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  75.23  180.74  69.4
4.3  Radius of line 3092 at 1.58875 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  74.91  180.74  69.44
4.3  Radius of line 3093 at 1.58875 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  74.58  180.73  69.47
2.4  Seg length ending at pt. 2 >= 6.0 stdevs above mean at 1.6381.  (no action taken)
     B1      X, Y, Z:  133.35  176.57  78.31
2.5  Seg length ending at pt. 455 <= 0.1 at 0.0245.  (removed)
     A       X, Y, Z:  132.17  177.21  77.4
2.4  Seg length ending at pt. 551 >= 6.0 stdevs above mean at 0.7685.  (no action taken)
     B1      X, Y, Z:  100.87  169.4  70.09
2.4  Seg length ending at pt. 552 >= 6.0 stdevs above mean at 0.824.  (no action taken)
     B1      X, Y, Z:  100.11  169.18  69.86
2.5  Seg length ending at pt. 601 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  86.26  176.24  68.54
2.4  Seg length ending at pt. 1652 >= 6.0 stdevs above mean at 0.7593.  (no action taken)
     B1      X, Y, Z:  106.45  185.05  61.16
2.4  Seg length ending at pt. 1653 >= 6.0 stdevs above mean at 0.7024.  (no action taken)
     B1      X, Y, Z:  106.88  185.18  60.62
2.4  Seg length ending at pt. 2760 >= 6.0 stdevs above mean at 0.9994.  (no action taken)
     B1      X, Y, Z:  147.16  214.57  82.34
2.4  Seg length ending at pt. 2761 >= 6.0 stdevs above mean at 0.9873.  (no action taken)
     B1      X, Y, Z:  148.09  214.54  82.67
2.4  Seg length ending at pt. 2762 >= 6.0 stdevs above mean at 0.9878.  (no action taken)
     B1      X, Y, Z:  149.07  214.57  82.79
2.4  Seg length ending at pt. 2763 >= 6.0 stdevs above mean at 1.0042.  (no action taken)
     B1      X, Y, Z:  150.07  214.64  82.73
2.5  Seg length ending at pt. 3111 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  100.11  169.18  69.86
2.4  Seg length ending at pt. 3112 >= 6.0 stdevs above mean at 1.0789.  (no action taken)
     B1      X, Y, Z:  100.49  168.18  69.72
2.4  Seg length ending at pt. 3243 >= 6.0 stdevs above mean at 0.9352.  (no action taken)
     B1      X, Y, Z:  125.94  140.97  74.19
2.4  Seg length ending at pt. 3244 >= 6.0 stdevs above mean at 0.9323.  (no action taken)
     B1      X, Y, Z:  126.67  140.56  74.6
2.4  Seg length ending at pt. 3245 >= 6.0 stdevs above mean at 0.9268.  (no action taken)
     B1      X, Y, Z:  127.33  140.09  75.05
2.4  Seg length ending at pt. 3726 >= 6.0 stdevs above mean at 0.955.  (no action taken)
     B1      X, Y, Z:  125.42  141.65  71.26
2.4  Seg length ending at pt. 3727 >= 6.0 stdevs above mean at 0.9535.  (no action taken)
     B1      X, Y, Z:  126.16  141.05  71.22
2.4  Seg length ending at pt. 3744 >= 6.0 stdevs above mean at 1.0521.  (no action taken)
     B1      X, Y, Z:  131.43  137.27  70.82
2.4  Seg length ending at pt. 3745 >= 6.0 stdevs above mean at 1.0608.  (no action taken)
     B1      X, Y, Z:  132.33  136.71  70.86
2.4  Seg length ending at pt. 3746 >= 6.0 stdevs above mean at 1.0493.  (no action taken)
     B1      X, Y, Z:  133.16  136.07  70.91
2.4  Seg length ending at pt. 3749 >= 6.0 stdevs above mean at 1.0784.  (no action taken)
     B1      X, Y, Z:  134.93  134.98  70.99
2.4  Seg length ending at pt. 3750 >= 6.0 stdevs above mean at 1.0836.  (no action taken)
     B1      X, Y, Z:  135.97  134.68  71.04
2.4  Seg length ending at pt. 3751 >= 6.0 stdevs above mean at 1.0876.  (no action taken)
     B1      X, Y, Z:  137.03  134.45  71.12
2.4  Seg length ending at pt. 3752 >= 6.0 stdevs above mean at 1.0789.  (no action taken)
     B1      X, Y, Z:  138.09  134.27  71.21
2.4  Seg length ending at pt. 4174 >= 6.0 stdevs above mean at 1.0471.  (no action taken)
     B1      X, Y, Z:  134.22  134.35  71.18
2.4  Seg length ending at pt. 4175 >= 6.0 stdevs above mean at 1.0523.  (no action taken)
     B1      X, Y, Z:  134.55  133.38  71.42
2.5  Seg length ending at pt. 4597 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  152.92  120.83  74.39
2.4  Seg length ending at pt. 4602 >= 6.0 stdevs above mean at 1.6649.  (no action taken)
     B1      X, Y, Z:  153.4  118.43  74.86
2.4  Seg length ending at pt. 4960 >= 6.0 stdevs above mean at 111.641.  (no action taken)
     B1      X, Y, Z:  152.91  120.82  74.39
2.4  Seg length ending at pt. 4961 >= 6.0 stdevs above mean at 130.9699.  (no action taken)
     B1      X, Y, Z:  132.15  177.2  77.39
2.4  Seg length ending at pt. 5106 >= 6.0 stdevs above mean at 0.713.  (no action taken)
     B1      X, Y, Z:  179.11  185.41  83.7
2.6  Line 1 and line 4961 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  132.15  177.2  77.39
2.6  Line 667 and line 1652 have the same coordinates.  (second line removed)
     A      X, Y, Z:  105.99  184.98  61.76
2.6  Line 736 and line 1219 have the same coordinates.  (second line removed)
     A      X, Y, Z:  127.85  187.6  63.63
2.6  Line 2055 and line 3077 have the same coordinates.  (second line removed)
     A      X, Y, Z:  80.19  180.71  68.92
2.6  Line 2279 and line 2736 have the same coordinates.  (second line removed)
     A      X, Y, Z:  140.58  209.95  76.28
2.6  Line 3220 and line 3718 have the same coordinates.  (second line removed)
     A      X, Y, Z:  122.18  143.39  71.06
2.6  Line 3748 and line 4174 have the same coordinates.  (second line removed)
     A      X, Y, Z:  133.91  135.33  70.98
2.6  Line 4251 and line 4960 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  152.91  120.82  74.39
4.4  Line 20 of rad 0.89681 links to 19 of rad 0.214688.  (no action taken)
     B1      X, Y, Z:  136.59  175.31  78.16
4.4  Line 1491 of rad 0.89681 links to 1490 of rad 0.177428.  (no action taken)
     B1      X, Y, Z:  208.78  203.72  60.59
4.4  Line 3118 of rad 0.89681 links to 3117 of rad 0.314326.  (no action taken)
     B1      X, Y, Z:  101.58  167.41  69.94
4.4  Line 3248 of rad 0.89681 links to 3247 of rad 0.214688.  (no action taken)
     B1      X, Y, Z:  127.95  139.83  75.42
4.4  Line 4191 of rad 0.89681 links to 4190 of rad 0.285751.  (no action taken)
     B1      X, Y, Z:  137.25  132.2  71.22
4.4  Line 4608 of rad 0.89681 links to 4607 of rad 0.285751.  (no action taken)
     B1      X, Y, Z:  153.78  117.35  74.68
 
 


Number of type A irregularities = 10
Number of type B1 irregularities = 48
Number of type B2 irregularities = 0
Number of type C irregularities = 0
