# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\cell-10-Biocytin_25X_-ims.swc.swc created with StdSwc version 1.31 on 4/30/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\cell-10-Biocytin_25X_-ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  204.18  149.59  3.82
4.3  Radius of line 501 at 3.33178 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  156.56  107.83  7.47
4.3  Radius of line 502 at 4.75213 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  155.07  107.21  7.73
4.3  Radius of line 503 at 6.41615 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  154.22  107.01  7.79
4.3  Radius of line 504 at 6.41615 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  153.37  106.81  7.85
4.3  Radius of line 1040 at 6.41615 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  153.37  106.81  7.85
4.3  Radius of line 1041 at 5.9469 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  154.7  107.14  7.63
4.3  Radius of line 1042 at 5.393 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  155.99  107.63  7.5
4.3  Radius of line 1043 at 4.70904 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  157.25  108.18  7.42
4.3  Radius of line 1044 at 3.9146 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  158.49  108.67  7.32
4.3  Radius of line 1045 at 3.09167 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  159.71  109.06  7.22
2.5  Seg length ending at pt. 382 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  204.18  149.59  3.82
2.4  Seg length ending at pt. 505 >= 6.0 stdevs above mean at 2.8275.  (no action taken)
     B1      X, Y, Z:  154.96  107.1  10.17
2.5  Seg length ending at pt. 567 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  199.58  104.9  22.11
2.5  Seg length ending at pt. 1174 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  239.6  87.39  5.33
2.5  Seg length ending at pt. 1202 <= 0.1 at 0.0894.  (removed)
     A       X, Y, Z:  257.58  77.02  2.94
2.5  Seg length ending at pt. 1218 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  239.6  87.39  5.33
2.5  Seg length ending at pt. 1333 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  191.96  92.05  10.5
2.4  Seg length ending at pt. 1334 >= 6.0 stdevs above mean at 5.2459.  (no action taken)
     B1      X, Y, Z:  196.72  90.82  12.33
2.5  Seg length ending at pt. 1652 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  217.87  80.59  12.0
2.5  Seg length ending at pt. 1829 <= 0.1 at 0.0894.  (removed)
     A       X, Y, Z:  206.14  76.6  22.03
2.5  Seg length ending at pt. 1995 <= 0.1 at 0.0245.  (removed)
     A       X, Y, Z:  166.36  125.68  7.32
2.5  Seg length ending at pt. 2013 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  173.55  136.39  11.32
2.4  Seg length ending at pt. 2210 >= 6.0 stdevs above mean at 2.0183.  (no action taken)
     B1      X, Y, Z:  210.49  119.0  41.9
2.5  Seg length ending at pt. 2362 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  166.34  125.67  7.31
2.7  Line 444 of rad 1.04909 is an included side branch.  (removed)
     A      X, Y, Z:  170.84  126.5  3.7
2.7  Line 481 of rad 1.04909 is an included side branch.  (removed)
     A      X, Y, Z:  164.86  120.71  5.53
2.7  Line 2492 of rad 0.334272 is an included side branch.  (removed)
     A      X, Y, Z:  197.16  201.61  44.01
2.6  Line 1 and line 199 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  204.18  149.59  3.82
2.6  Line 504 and line 1041 have the same coordinates.  (second line removed)
     A      X, Y, Z:  153.37  106.81  7.85
2.6  Line 847 and line 925 have the same coordinates.  (second line removed)
     A      X, Y, Z:  252.53  76.75  35.23
2.6  Line 1098 and line 1345 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  191.96  92.05  10.5
2.6  Line 1346 and line 1808 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  198.06  90.48  12.84
2.6  Line 1362 and line 1497 have the same coordinates.  (second line removed)
     A      X, Y, Z:  208.61  85.19  13.07
2.6  Line 2012 and line 2139 have the same coordinates.  (second line removed)
     A      X, Y, Z:  173.55  136.39  11.32
2.6  Line 2494 and line 2625 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  197.16  201.61  44.01
4.4  Line 210 of rad 1.04909 links to 209 of rad 0.228312.  (no action taken)
     B1      X, Y, Z:  211.46  155.66  4.04
4.4  Line 445 of rad 1.04909 links to 443 of rad 0.404469.  (no action taken)
     B1      X, Y, Z:  170.92  126.63  3.76
4.4  Line 594 of rad 1.04909 links to 593 of rad 0.404469.  (no action taken)
     B1      X, Y, Z:  221.67  112.15  20.34
4.4  Line 1104 of rad 0.903775 links to 1103 of rad 0.334272.  (no action taken)
     B1      X, Y, Z:  196.95  93.78  8.31
4.4  Line 1183 of rad 1.04909 links to 1182 of rad 0.276258.  (no action taken)
     B1      X, Y, Z:  246.45  85.47  5.47
4.4  Line 1204 of rad 1.04909 links to 1203 of rad 0.228312.  (no action taken)
     B1      X, Y, Z:  258.43  76.18  2.52
4.4  Line 1332 of rad 1.26939 links to 1331 of rad 0.489408.  (no action taken)
     B1      X, Y, Z:  304.12  54.69  21.16
4.4  Line 1339 of rad 1.04909 links to 1338 of rad 0.367699.  (no action taken)
     B1      X, Y, Z:  195.63  91.04  11.79
4.4  Line 1355 of rad 1.04909 links to 1354 of rad 0.367699.  (no action taken)
     B1      X, Y, Z:  204.93  86.71  13.39
4.4  Line 1463 of rad 2.03978 links to 1462 of rad 0.276258.  (no action taken)
     B1      X, Y, Z:  271.35  70.39  33.21
4.4  Line 1506 of rad 0.691235 links to 1505 of rad 0.303883.  (no action taken)
     B1      X, Y, Z:  215.74  81.54  12.29
4.4  Line 1515 of rad 1.04909 links to 1514 of rad 0.334272.  (no action taken)
     B1      X, Y, Z:  220.89  76.47  11.34
4.4  Line 1531 of rad 1.04909 links to 1530 of rad 0.303883.  (no action taken)
     B1      X, Y, Z:  231.7  70.8  11.36
4.4  Line 1620 of rad 1.04909 links to 1619 of rad 0.207557.  (no action taken)
     B1      X, Y, Z:  272.14  24.93  15.91
4.4  Line 1830 of rad 1.04909 links to 1828 of rad 0.367699.  (no action taken)
     B1      X, Y, Z:  206.07  76.07  22.38
4.4  Line 2012 of rad 1.04909 links to 2011 of rad 0.444916.  (no action taken)
     B1      X, Y, Z:  173.55  136.39  11.32
4.4  Line 2020 of rad 1.04909 links to 2019 of rad 0.367699.  (no action taken)
     B1      X, Y, Z:  176.62  142.07  11.48
4.4  Line 2139 of rad 1.04909 links to 2011 of rad 0.444916.  (no action taken)
     B1      X, Y, Z:  174.05  136.62  11.79
4.4  Line 2190 of rad 1.04688 links to 2189 of rad 0.276258.  (no action taken)
     B1      X, Y, Z:  200.62  120.14  30.04
4.4  Line 2378 of rad 1.04909 links to 2377 of rad 0.367699.  (no action taken)
     B1      X, Y, Z:  167.79  136.77  10.96
4.4  Line 2471 of rad 1.04909 links to 2470 of rad 0.334272.  (no action taken)
     B1      X, Y, Z:  191.66  191.66  37.41
4.4  Line 2504 of rad 1.04909 links to 2503 of rad 0.228312.  (no action taken)
     B1      X, Y, Z:  204.45  203.6  45.55
4.4  Line 2633 of rad 1.04909 links to 2632 of rad 0.334272.  (no action taken)
     B1      X, Y, Z:  200.86  207.63  45.05
4.4  Line 2743 of rad 1.04909 links to 2742 of rad 0.334272.  (no action taken)
     B1      X, Y, Z:  255.99  250.41  53.76
 
 


Number of type A irregularities = 18
Number of type B1 irregularities = 42
Number of type B2 irregularities = 0
Number of type C irregularities = 0
