# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\cell-1-TX_RV_Biocytin_25x_-ims.swc.swc created with StdSwc version 1.31 on 4/30/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\cell-1-TX_RV_Biocytin_25x_-ims.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  243.05  283.53  28.72
4.3  Radius of line 1048 at 1.51765 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  221.45  313.25  7.88
4.3  Radius of line 1049 at 1.51765 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  221.04  314.07  7.92
4.3  Radius of line 1050 at 1.51765 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  220.54  314.84  7.93
4.3  Radius of line 1051 at 1.51765 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  219.94  315.54  7.94
4.3  Radius of line 1052 at 1.51765 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  219.3  316.22  7.95
4.3  Radius of line 1053 at 1.51765 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  218.34  317.04  7.95
4.3  Radius of line 1054 at 1.51765 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  216.75  318.19  7.96
2.5  Seg length ending at pt. 298 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  243.05  283.53  28.72
2.4  Seg length ending at pt. 743 >= 6.0 stdevs above mean at 2.8402.  (no action taken)
     B1      X, Y, Z:  324.12  210.25  80.67
2.5  Seg length ending at pt. 775 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  238.92  293.36  22.97
2.4  Seg length ending at pt. 983 >= 6.0 stdevs above mean at 1.9877.  (no action taken)
     B1      X, Y, Z:  240.63  212.6  82.0
2.5  Seg length ending at pt. 1032 <= 0.1 at 0.0361.  (removed)
     A       X, Y, Z:  229.47  304.39  18.2
2.4  Seg length ending at pt. 1054 >= 6.0 stdevs above mean at 1.9623.  (no action taken)
     B1      X, Y, Z:  216.75  318.19  7.96
2.4  Seg length ending at pt. 1055 >= 6.0 stdevs above mean at 150.5828.  (no action taken)
     B1      X, Y, Z:  229.45  304.36  18.2
2.4  Seg length ending at pt. 1068 >= 6.0 stdevs above mean at 2.2895.  (no action taken)
     B1      X, Y, Z:  241.7  304.6  29.55
2.4  Seg length ending at pt. 1069 >= 6.0 stdevs above mean at 2.2801.  (no action taken)
     B1      X, Y, Z:  242.85  306.39  30.37
2.5  Seg length ending at pt. 1359 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  238.02  302.35  27.04
2.5  Seg length ending at pt. 1654 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  335.43  313.4  72.38
2.4  Seg length ending at pt. 1665 >= 6.0 stdevs above mean at 2.0535.  (no action taken)
     B1      X, Y, Z:  346.58  313.81  74.33
2.4  Seg length ending at pt. 1704 >= 6.0 stdevs above mean at 2.2728.  (no action taken)
     B1      X, Y, Z:  380.22  304.51  83.82
2.6  Line 1 and line 134 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  243.05  283.53  28.72
2.6  Line 342 and line 552 have the same coordinates.  (second line removed)
     A      X, Y, Z:  257.18  277.1  30.42
2.6  Line 676 and line 743 have the same coordinates.  (second line removed)
     A      X, Y, Z:  323.59  210.49  77.89
2.6  Line 786 and line 1055 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  229.45  304.36  18.2
2.6  Line 916 and line 983 have the same coordinates.  (second line removed)
     A      X, Y, Z:  241.51  213.74  80.63
2.6  Line 1164 and line 1241 have the same coordinates.  (second line removed)
     A      X, Y, Z:  285.65  358.24  69.84
2.6  Line 1377 and line 1510 have the same coordinates.  (second line removed)
     A      X, Y, Z:  251.24  303.82  38.17
4.4  Line 1048 of rad 1.51765 links to 1047 of rad 0.64363.  (no action taken)
     B1      X, Y, Z:  221.45  313.25  7.88
 
 


Number of type A irregularities = 10
Number of type B1 irregularities = 19
Number of type B2 irregularities = 0
Number of type C irregularities = 0
