# Standardization file for C:\Users\Carolina\Desktop\gaa2ct\data_autoproc\Temp_LMeasure\P16_cell1_z1-lsm_ch1_soma_no-axon.swc.swc created with StdSwc version 1.31 on 9/6/22.
# Edited SWC file saved as C:\Users\Carolina\Desktop\gaa2ct\data_autoproc\Temp_LMeasure\P16_cell1_z1-lsm_ch1_soma_no-axon.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 2.  (no action taken)
     B1      X, Y, Z:  95.59  66.86  9.44
4.3  Radius of line 2 at 4.0979 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.58  66.83  9.45
4.3  Radius of line 3 at 4.19592 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.42  66.46  9.61
4.3  Radius of line 4 at 4.25906 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.25  66.07  9.77
4.3  Radius of line 5 at 4.28363 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.08  65.68  9.94
4.3  Radius of line 6 at 4.28363 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.99  65.49  10.03
4.5  Radius of terminal line 7 at 4.28363 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.9  65.29  10.12
4.5  Radius of terminal line 8 at 4.25906 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.08  65.69  9.93
4.3  Radius of line 9 at 4.26842 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.73  64.89  10.32
4.3  Radius of line 10 at 4.2148 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.54  64.49  10.52
4.3  Radius of line 11 at 4.12646 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.36  64.09  10.73
4.3  Radius of line 12 at 4.00885 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.17  63.69  10.95
4.3  Radius of line 13 at 3.86842 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.88  63.34  11.15
4.3  Radius of line 14 at 3.71184 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.47  63.11  11.31
4.3  Radius of line 15 at 3.54527 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.16  62.81  11.57
4.3  Radius of line 16 at 3.37386 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.0  62.41  11.82
4.3  Radius of line 17 at 3.20145 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  92.93  61.99  12.09
4.5  Radius of terminal line 88 at 4.19592 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.25  66.08  9.76
4.3  Radius of line 89 at 4.0979 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.57  66.81  9.46
4.3  Radius of line 90 at 4.0979 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.55  66.76  9.48
4.3  Radius of line 91 at 4.0979 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.51  66.67  9.52
4.5  Radius of terminal line 92 at 4.0979 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.42  66.47  9.59
4.3  Radius of line 93 at 3.88612 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  96.07  66.72  9.42
4.3  Radius of line 94 at 3.77678 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  96.54  66.58  9.42
4.3  Radius of line 95 at 3.64113 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  97.01  66.43  9.42
4.3  Radius of line 96 at 3.47912 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  97.48  66.28  9.44
4.3  Radius of line 97 at 3.29247 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  97.96  66.11  9.46
4.3  Radius of line 98 at 3.08479 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  98.43  65.95  9.49
4.3  Radius of line 663 at 3.76085 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.35  67.24  9.64
4.3  Radius of line 664 at 3.53048 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.1  67.61  9.85
4.3  Radius of line 665 at 3.28207 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.85  67.97  10.07
4.3  Radius of line 1346 at 4.06539 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.43  66.49  9.59
4.3  Radius of line 1347 at 4.13435 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.27  66.12  9.75
4.3  Radius of line 1348 at 4.17483 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.11  65.74  9.93
4.3  Radius of line 1349 at 4.18516 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.94  65.35  10.11
4.3  Radius of line 1350 at 4.16498 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.78  64.96  10.3
4.3  Radius of line 1351 at 4.11526 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.61  64.56  10.5
4.3  Radius of line 1352 at 4.03819 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.44  64.15  10.7
4.3  Radius of line 1353 at 3.93697 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.27  63.74  10.92
4.3  Radius of line 1354 at 3.81541 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.98  63.39  11.12
4.3  Radius of line 1355 at 3.67751 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.64  63.08  11.3
4.3  Radius of line 1356 at 3.52718 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.32  62.74  11.49
4.3  Radius of line 1357 at 3.36799 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.07  62.42  11.79
4.3  Radius of line 1358 at 3.20294 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  92.95  62.01  12.06
4.3  Radius of line 1971 at 3.88231 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.78  67.34  9.54
4.3  Radius of line 1972 at 3.78462 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.97  67.81  9.65
4.3  Radius of line 1973 at 3.68801 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  96.15  68.27  9.78
4.3  Radius of line 1974 at 3.59817 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  96.33  68.73  9.91
4.3  Radius of line 1975 at 3.51528 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  96.5  69.18  10.05
4.3  Radius of line 1976 at 3.43463 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  96.66  69.63  10.21
4.3  Radius of line 1977 at 3.34838 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  96.82  70.08  10.37
4.3  Radius of line 1978 at 3.24787 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  96.96  70.53  10.54
4.3  Radius of line 1979 at 3.12569 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  97.09  70.97  10.73
4.3  Radius of line 3656 at 4.06245 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.42  66.47  9.6
4.3  Radius of line 3657 at 4.12839 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.24  66.08  9.77
4.3  Radius of line 3658 at 4.16568 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  95.06  65.69  9.95
4.3  Radius of line 3659 at 4.1727 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.88  65.29  10.14
4.3  Radius of line 3660 at 4.14912 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.7  64.88  10.34
4.3  Radius of line 3661 at 4.09609 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.51  64.48  10.54
4.3  Radius of line 3662 at 4.01608 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.31  64.07  10.75
4.3  Radius of line 3663 at 3.9126 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  94.12  63.67  10.97
4.3  Radius of line 3664 at 3.78979 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.84  63.32  11.19
4.3  Radius of line 3665 at 3.65205 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.45  63.08  11.39
4.3  Radius of line 3666 at 3.50368 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.19  62.74  11.66
4.3  Radius of line 3667 at 3.34858 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  93.03  62.35  11.94
4.3  Radius of line 3668 at 3.19012 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  92.93  61.92  12.19
2.5  Seg length ending at pt. 2 <= 0.1 at 0.0332.  (removed)
     A       X, Y, Z:  95.58  66.83  9.45
2.5  Seg length ending at pt. 88 <= 0.1 at 0.0141.  (removed)
     A       X, Y, Z:  95.25  66.08  9.76
2.5  Seg length ending at pt. 90 <= 0.1 at 0.0574.  (removed)
     A       X, Y, Z:  95.55  66.76  9.48
2.4  Seg length ending at pt. 312 >= 6.0 stdevs above mean at 28.6854.  (no action taken)
     B1      X, Y, Z:  142.59  139.99  31.07
2.4  Seg length ending at pt. 788 >= 6.0 stdevs above mean at 56.5649.  (no action taken)
     B1      X, Y, Z:  126.14  79.4  38.41
2.4  Seg length ending at pt. 1046 >= 6.0 stdevs above mean at 77.0254.  (no action taken)
     B1      X, Y, Z:  147.69  146.46  29.35
2.4  Seg length ending at pt. 1102 >= 6.0 stdevs above mean at 86.5058.  (no action taken)
     B1      X, Y, Z:  164.28  82.85  77.88
2.4  Seg length ending at pt. 1173 >= 6.0 stdevs above mean at 76.3674.  (no action taken)
     B1      X, Y, Z:  146.96  146.24  29.5
2.4  Seg length ending at pt. 1415 >= 6.0 stdevs above mean at 29.083.  (no action taken)
     B1      X, Y, Z:  110.5  93.09  18.04
2.5  Seg length ending at pt. 1460 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  124.19  103.96  25.81
2.4  Seg length ending at pt. 1474 >= 6.0 stdevs above mean at 41.307.  (no action taken)
     B1      X, Y, Z:  89.93  117.22  14.42
2.4  Seg length ending at pt. 2244 >= 6.0 stdevs above mean at 47.1025.  (no action taken)
     B1      X, Y, Z:  122.42  134.31  4.23
2.5  Seg length ending at pt. 2302 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  122.46  154.9  8.81
2.4  Seg length ending at pt. 2613 >= 6.0 stdevs above mean at 48.9409.  (no action taken)
     B1      X, Y, Z:  126.21  72.17  63.09
2.4  Seg length ending at pt. 3059 >= 6.0 stdevs above mean at 51.4025.  (no action taken)
     B1      X, Y, Z:  122.72  71.68  57.16
2.5  Seg length ending at pt. 3337 <= 0.1 at 0.0806.  (removed)
     A       X, Y, Z:  110.48  95.58  16.27
2.5  Seg length ending at pt. 3518 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  148.89  133.85  0.4
2.4  Seg length ending at pt. 3522 >= 6.0 stdevs above mean at 84.6394.  (no action taken)
     B1      X, Y, Z:  98.83  123.62  69.6
2.5  Seg length ending at pt. 3519 <= 0.1 at 0.0539.  (removed)
     A       X, Y, Z:  148.51  133.61  0.63
2.7  Line 7 of rad 4.28363 is an included side branch.  (removed)
     A      X, Y, Z:  94.9  65.29  10.12
2.7  Line 92 of rad 4.0979 is an included side branch.  (removed)
     A      X, Y, Z:  95.42  66.47  9.59
2.7  Line 787 of rad 0.33048 is an included side branch.  (removed)
     A      X, Y, Z:  87.22  112.63  14.19
2.7  Line 1461 of rad 0.34825 is an included side branch.  (removed)
     A      X, Y, Z:  124.16  103.88  25.81
2.7  Line 2299 of rad 0.419165 is an included side branch.  (removed)
     A      X, Y, Z:  122.56  155.4  9.35
2.7  Line 2304 of rad 0.340065 is an included side branch.  (removed)
     A      X, Y, Z:  122.52  154.41  8.8
2.7  Line 2395 of rad 0.325215 is an included side branch.  (removed)
     A      X, Y, Z:  122.52  153.92  8.69
2.7  Line 2958 of rad 0.59667 is an included side branch.  (removed)
     A      X, Y, Z:  103.79  85.29  16.97
2.7  Line 3299 of rad 0.581025 is an included side branch.  (removed)
     A      X, Y, Z:  103.4  84.46  16.7
2.7  Line 3336 of rad 0.377715 is an included side branch.  (removed)
     A      X, Y, Z:  110.47  95.61  16.21
2.7  Line 3492 of rad 0.320335 is an included side branch.  (removed)
     A      X, Y, Z:  149.66  134.32  -0.03
2.7  Line 3520 of rad 0.31015 is an included side branch.  (removed)
     A      X, Y, Z:  148.19  133.44  0.97
2.6  Line 2398 and line 2401 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  122.49  154.56  9.33
2.6  Line 2494 and line 2908 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  96.71  84.05  22.6
2.1  Line 1 has 3 daughters.  Type is 2.  (no action taken)
     B1      X, Y, Z:  95.59  66.86  9.44
2.1  Line 89 has 3 daughters.  Type is 2.  (no action taken)
     B1      X, Y, Z:  95.57  66.81  9.46
 
 


Number of type A irregularities = 20
Number of type B1 irregularities = 81
Number of type B2 irregularities = 0
Number of type C irregularities = 0
