# Standardization file for C:\Users\Carolina\Desktop\gaa2ct\data_autoproc\Temp_LMeasure\P12_cell1_40x_ch2_skeleton_new_no-axon.swc.swc created with StdSwc version 1.31 on 9/6/22.
# Edited SWC file saved as C:\Users\Carolina\Desktop\gaa2ct\data_autoproc\Temp_LMeasure\P12_cell1_40x_ch2_skeleton_new_no-axon.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 2.  (no action taken)
     B1      X, Y, Z:  105.99  121.83  25.57
4.3  Radius of line 2 at 5.89492 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.01  121.85  25.57
4.3  Radius of line 3 at 5.89492 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.03  121.88  25.58
4.3  Radius of line 4 at 5.89492 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.05  121.9  25.58
4.3  Radius of line 5 at 5.89492 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.07  121.92  25.58
4.3  Radius of line 6 at 5.89492 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.15  122.0  25.6
4.5  Radius of terminal line 7 at 5.89492 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.31  122.18  25.62
4.3  Radius of line 8 at 5.86348 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.1  121.87  25.61
4.3  Radius of line 9 at 5.87301 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.48  122.0  25.76
4.3  Radius of line 10 at 5.87301 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.68  122.06  25.83
4.5  Radius of terminal line 11 at 5.87301 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.87  122.12  25.9
4.3  Radius of line 12 at 5.86348 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.21  121.91  25.65
4.5  Radius of terminal line 13 at 5.86348 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.43  121.98  25.73
4.3  Radius of line 14 at 5.85583 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.14  121.48  25.36
4.3  Radius of line 15 at 5.73559 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.28  121.16  25.16
4.3  Radius of line 16 at 5.63193 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.87  121.05  25.31
4.3  Radius of line 17 at 5.527 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.45  120.94  25.48
4.3  Radius of line 18 at 5.42551 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.02  120.83  25.67
4.3  Radius of line 19 at 5.29904 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  104.59  120.72  25.88
4.3  Radius of line 20 at 5.17617 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  104.17  120.64  26.11
4.3  Radius of line 21 at 5.03444 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  103.76  120.54  26.38
4.3  Radius of line 22 at 4.835 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  103.37  120.48  26.69
4.3  Radius of line 428 at 5.65306 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.72  121.05  24.89
4.3  Radius of line 429 at 5.57557 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.13  120.94  24.64
4.3  Radius of line 430 at 5.48441 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.54  120.8  24.41
4.3  Radius of line 431 at 5.38989 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.95  120.7  24.19
4.3  Radius of line 432 at 5.26118 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  108.37  120.6  23.98
4.3  Radius of line 433 at 5.12989 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  108.79  120.49  23.77
4.3  Radius of line 434 at 4.96176 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  109.22  120.4  23.57
4.3  Radius of line 435 at 4.8086 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  109.66  120.3  23.37
4.3  Radius of line 1264 at 5.86394 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.31  122.28  26.06
4.3  Radius of line 1265 at 5.82533 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.75  122.44  26.22
4.3  Radius of line 1266 at 5.75482 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  108.17  122.63  26.38
4.3  Radius of line 1267 at 5.66261 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  108.59  122.8  26.56
4.3  Radius of line 1268 at 5.51499 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  108.99  123.01  26.74
4.3  Radius of line 1269 at 5.35398 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  109.36  123.23  26.95
4.3  Radius of line 1270 at 5.15125 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  109.73  123.45  27.16
4.3  Radius of line 1271 at 4.93173 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  110.09  123.66  27.39
4.3  Radius of line 1941 at 5.81131 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.52  121.67  25.68
4.3  Radius of line 1942 at 5.73951 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.04  121.5  25.76
4.3  Radius of line 1943 at 5.66263 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  104.57  121.34  25.83
4.3  Radius of line 1944 at 5.55052 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  104.11  121.16  25.89
4.3  Radius of line 1945 at 5.43226 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  103.65  120.97  25.96
4.3  Radius of line 1946 at 5.26431 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  103.18  120.79  26.02
4.3  Radius of line 1947 at 5.04007 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.73  120.62  26.1
4.3  Radius of line 1948 at 4.81199 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.26  120.47  26.18
4.3  Radius of line 2687 at 5.82315 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.34  121.84  25.2
4.3  Radius of line 2688 at 5.78518 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.71  121.84  24.83
4.3  Radius of line 2689 at 5.70741 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.07  121.86  24.48
4.3  Radius of line 2690 at 5.61627 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.45  121.86  24.13
4.3  Radius of line 2691 at 5.52046 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.84  121.86  23.8
4.3  Radius of line 2692 at 5.42164 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  108.24  121.84  23.48
4.3  Radius of line 2693 at 5.29192 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  108.65  121.79  23.18
4.3  Radius of line 2694 at 5.1495 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  109.07  121.77  22.89
4.3  Radius of line 2695 at 4.96227 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  109.49  121.76  22.61
4.3  Radius of line 2840 at 5.76502 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.52  121.93  25.66
4.3  Radius of line 2841 at 5.70578 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.04  121.99  25.74
4.3  Radius of line 2842 at 5.65482 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  104.57  122.07  25.82
4.3  Radius of line 2843 at 5.58204 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  104.1  122.14  25.89
4.3  Radius of line 2844 at 5.50127 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  103.63  122.22  25.95
4.3  Radius of line 2845 at 5.42527 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  103.16  122.31  26.02
4.3  Radius of line 2846 at 5.31546 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.69  122.42  26.1
4.3  Radius of line 2847 at 5.13302 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  102.24  122.57  26.17
4.3  Radius of line 2848 at 4.92486 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  101.79  122.71  26.25
4.3  Radius of line 3489 at 5.84523 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.63  122.53  25.66
4.3  Radius of line 3490 at 5.7211 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.97  122.86  25.69
4.3  Radius of line 3491 at 5.53592 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.32  123.2  25.72
4.3  Radius of line 3492 at 5.2709 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.66  123.55  25.75
4.3  Radius of line 3493 at 4.95777 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  108.02  123.89  25.77
4.3  Radius of line 4153 at 5.78051 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.88  121.6  25.13
4.3  Radius of line 4154 at 5.67674 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.77  121.36  24.7
4.3  Radius of line 4155 at 5.53252 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.68  121.11  24.28
4.3  Radius of line 4156 at 5.34273 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.58  120.86  23.86
4.3  Radius of line 4157 at 5.09331 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.5  120.6  23.44
4.3  Radius of line 4158 at 4.81709 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  105.44  120.34  23.01
4.3  Radius of line 4310 at 5.84836 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.33  121.78  25.21
4.3  Radius of line 4311 at 5.81199 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  106.68  121.74  24.86
4.3  Radius of line 4312 at 5.74069 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.04  121.71  24.52
4.3  Radius of line 4313 at 5.63891 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.4  121.67  24.18
4.3  Radius of line 4314 at 5.51122 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  107.78  121.63  23.87
4.3  Radius of line 4315 at 5.40015 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  108.16  121.6  23.55
4.3  Radius of line 4316 at 5.26344 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  108.55  121.56  23.25
4.3  Radius of line 4317 at 5.11694 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  108.96  121.51  22.98
4.3  Radius of line 4318 at 4.96744 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  109.37  121.48  22.71
2.5  Seg length ending at pt. 2 <= 0.1 at 0.0283.  (removed)
     A       X, Y, Z:  106.01  121.85  25.57
2.5  Seg length ending at pt. 4 <= 0.1 at 0.0283.  (removed)
     A       X, Y, Z:  106.05  121.9  25.58
2.4  Seg length ending at pt. 71 >= 6.0 stdevs above mean at 31.2394.  (no action taken)
     B1      X, Y, Z:  119.25  133.69  41.27
2.4  Seg length ending at pt. 116 >= 6.0 stdevs above mean at 41.6064.  (no action taken)
     B1      X, Y, Z:  126.03  161.72  22.31
2.4  Seg length ending at pt. 685 >= 6.0 stdevs above mean at 22.8235.  (no action taken)
     B1      X, Y, Z:  148.85  90.69  47.71
2.4  Seg length ending at pt. 877 >= 6.0 stdevs above mean at 104.1191.  (no action taken)
     B1      X, Y, Z:  130.18  181.3  13.09
2.4  Seg length ending at pt. 1419 >= 6.0 stdevs above mean at 70.8171.  (no action taken)
     B1      X, Y, Z:  80.87  115.07  70.17
2.5  Seg length ending at pt. 1664 <= 0.1 at 0.0548.  (removed)
     A       X, Y, Z:  117.32  154.73  42.22
2.4  Seg length ending at pt. 1667 >= 6.0 stdevs above mean at 70.2202.  (no action taken)
     B1      X, Y, Z:  71.72  101.39  43.17
2.4  Seg length ending at pt. 1818 >= 6.0 stdevs above mean at 24.8198.  (no action taken)
     B1      X, Y, Z:  120.81  157.52  17.79
2.4  Seg length ending at pt. 1926 >= 6.0 stdevs above mean at 69.8988.  (no action taken)
     B1      X, Y, Z:  72.16  101.15  43.05
2.4  Seg length ending at pt. 2600 >= 6.0 stdevs above mean at 151.96.  (no action taken)
     B1      X, Y, Z:  173.14  122.71  64.99
2.4  Seg length ending at pt. 3003 >= 6.0 stdevs above mean at 43.4452.  (no action taken)
     B1      X, Y, Z:  118.72  149.48  26.23
2.4  Seg length ending at pt. 3463 >= 6.0 stdevs above mean at 34.9273.  (no action taken)
     B1      X, Y, Z:  77.72  108.73  18.16
2.4  Seg length ending at pt. 3796 >= 6.0 stdevs above mean at 38.8999.  (no action taken)
     B1      X, Y, Z:  142.25  129.29  41.13
2.4  Seg length ending at pt. 3946 >= 6.0 stdevs above mean at 45.4612.  (no action taken)
     B1      X, Y, Z:  144.73  97.22  12.71
2.5  Seg length ending at pt. 4037 <= 0.1 at 0.0316.  (removed)
     A       X, Y, Z:  146.35  129.74  42.89
2.5  Seg length ending at pt. 4039 <= 0.1 at 0.0458.  (removed)
     A       X, Y, Z:  145.44  129.66  42.47
2.5  Seg length ending at pt. 3 <= 0.1 at 0.0648.  (removed)
     A       X, Y, Z:  106.03  121.88  25.58
2.5  Seg length ending at pt. 4038 <= 0.1 at 0.0283.  (removed)
     A       X, Y, Z:  145.9  129.71  42.68
2.5  Seg length ending at pt. 4040 <= 0.1 at 0.0678.  (removed)
     A       X, Y, Z:  145.0  129.56  42.26
2.7  Line 7 of rad 5.89492 is an included side branch.  (removed)
     A      X, Y, Z:  106.31  122.18  25.62
2.7  Line 11 of rad 5.87301 is an included side branch.  (removed)
     A      X, Y, Z:  106.87  122.12  25.9
2.7  Line 13 of rad 5.86348 is an included side branch.  (removed)
     A      X, Y, Z:  106.43  121.98  25.73
2.7  Line 1634 of rad 0.488075 is an included side branch.  (removed)
     A      X, Y, Z:  117.97  143.46  39.7
2.7  Line 1666 of rad 0.568185 is an included side branch.  (removed)
     A      X, Y, Z:  117.3  154.9  42.28
2.7  Line 1813 of rad 0.36818 is an included side branch.  (removed)
     A      X, Y, Z:  64.71  99.43  44.94
2.7  Line 2001 of rad 0.43743 is an included side branch.  (removed)
     A      X, Y, Z:  86.42  108.66  36.32
2.7  Line 3809 of rad 0.490675 is an included side branch.  (removed)
     A      X, Y, Z:  147.25  129.71  43.32
2.7  Line 4041 of rad 0.391695 is an included side branch.  (removed)
     A      X, Y, Z:  144.57  129.46  42.03
2.7  Line 4444 of rad 0.48679 is an included side branch.  (removed)
     A      X, Y, Z:  120.36  113.84  18.4
2.1  Line 1 has 5 daughters.  Type is 2.  (no action taken)
     B1      X, Y, Z:  105.99  121.83  25.57
2.1  Line 1663 has 3 daughters.  Type is 2.  (no action taken)
     B1      X, Y, Z:  117.33  154.68  42.2
 
 


Number of type A irregularities = 18
Number of type B1 irregularities = 99
Number of type B2 irregularities = 0
Number of type C irregularities = 0
