# Standardization file for C:\Users\karot\Desktop\gaa2ct\data_autoproc\Temp_LMeasure\LPS_microglia_Veh_1_Sec_3_Cell1.asc.swc created with StdSwc version 1.31 on 12/19/24.
# Edited SWC file saved as C:\Users\karot\Desktop\gaa2ct\data_autoproc\Temp_LMeasure\LPS_microglia_Veh_1_Sec_3_Cell1.asc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
4.2  Radius of line 331 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  2.93  -7.09  0.2
4.2  Radius of line 332 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  2.75  -9.07  0.2
4.2  Radius of line 333 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  2.58  -9.84  0.2
4.2  Radius of line 334 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  2.5  -10.78  0.2
4.2  Radius of line 335 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.55  -14.32  0.2
4.2  Radius of line 336 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.45  -14.91  0.2
4.2  Radius of line 337 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.88  -19.12  0.2
4.2  Radius of line 338 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  3.52  -28.32  0.2
4.2  Radius of line 339 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -4.78  -39.01  0.2
4.2  Radius of line 340 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -4.9  -39.15  0.2
4.2  Radius of line 341 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -6.45  -42.0  0.2
4.2  Radius of line 342 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -8.67  -37.0  0.2
4.2  Radius of line 343 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  6.01  -33.92  0.2
4.2  Radius of line 344 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  2.83  -37.78  0.2
4.2  Radius of line 345 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  9.72  -33.92  0.2
4.2  Radius of line 346 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  0.68  -30.3  0.2
2.5  Seg length ending at pt. 13 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  12.21  -5.58  0.0
2.5  Seg length ending at pt. 16 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  15.14  -9.71  0.0
2.5  Seg length ending at pt. 23 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  16.42  -11.17  0.0
2.5  Seg length ending at pt. 34 <= 0.1 at 0.07.  (removed)
     A       X, Y, Z:  20.8  -13.24  0.0
2.5  Seg length ending at pt. 41 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  24.94  -14.78  0.0
2.5  Seg length ending at pt. 57 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  32.67  -24.5  0.0
2.5  Seg length ending at pt. 62 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  -5.75  -7.74  0.0
2.5  Seg length ending at pt. 68 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  -11.0  -13.5  0.0
2.5  Seg length ending at pt. 78 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  -16.67  -16.85  0.0
2.5  Seg length ending at pt. 95 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  -3.27  -20.28  0.0
2.5  Seg length ending at pt. 155 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  33.88  8.16  -0.1
2.5  Seg length ending at pt. 212 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  16.42  7.38  -0.05
2.5  Seg length ending at pt. 223 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  19.6  17.62  -0.05
2.5  Seg length ending at pt. 246 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  30.53  14.43  -0.05
2.5  Seg length ending at pt. 273 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  44.54  34.21  -0.05
2.5  Seg length ending at pt. 290 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  -6.36  7.48  3.14
2.5  Seg length ending at pt. 300 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  -18.66  2.75  3.14
2.5  Seg length ending at pt. 302 <= 0.1 at 0.07.  (removed)
     A       X, Y, Z:  -19.51  3.77  3.14
2.5  Seg length ending at pt. 308 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  -22.44  2.06  3.14
2.4  Seg length ending at pt. 339 >= 6.0 stdevs above mean at 13.5339.  (no action taken)
     B1      X, Y, Z:  -4.78  -39.01  0.2
2.4  Seg length ending at pt. 343 >= 6.0 stdevs above mean at 11.9303.  (no action taken)
     B1      X, Y, Z:  6.01  -33.92  0.2
2.1  Line 1 has 8 daughters.  Type is 1.  (no action taken)
     B1      X, Y, Z:  5.9  -1.2  0.0
 
 


Number of type A irregularities = 19
Number of type B1 irregularities = 19
Number of type B2 irregularities = 0
Number of type C irregularities = 0
