# Standardization file for C:\Users\karot\Desktop\gaa2ct\data_autoproc\Temp_LMeasure\LPS_microglia_Veh_1_Sec_2_Cell3.asc.swc created with StdSwc version 1.31 on 12/19/24.
# Edited SWC file saved as C:\Users\karot\Desktop\gaa2ct\data_autoproc\Temp_LMeasure\LPS_microglia_Veh_1_Sec_2_Cell3.asc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
4.2  Radius of line 4 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -5.13  2.18  0.0
4.2  Radius of line 5 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -5.13  2.1  0.0
4.2  Radius of line 6 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -8.07  1.58  0.0
4.2  Radius of line 7 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -12.1  0.38  0.0
4.2  Radius of line 8 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -15.19  1.33  0.0
4.2  Radius of line 9 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -15.63  2.95  0.0
4.2  Radius of line 10 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -4.87  -0.39  0.0
4.2  Radius of line 11 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -4.79  -0.39  0.0
4.2  Radius of line 12 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -0.93  -2.1  0.0
4.2  Radius of line 13 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -0.83  -2.1  0.0
4.2  Radius of line 14 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -0.93  -4.42  0.0
4.2  Radius of line 15 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -0.67  -4.42  0.0
4.2  Radius of line 16 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.38  -4.78  0.0
4.2  Radius of line 17 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.82  -4.86  0.0
4.2  Radius of line 18 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  2.77  -5.04  0.0
4.2  Radius of line 19 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  4.23  -8.22  0.0
4.2  Radius of line 20 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  6.2  -9.16  0.0
4.2  Radius of line 21 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  6.46  -9.41  0.0
4.2  Radius of line 22 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  7.5  -11.05  0.0
4.2  Radius of line 23 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  7.5  -11.23  0.0
4.2  Radius of line 24 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  8.35  -12.85  0.0
4.2  Radius of line 25 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  9.31  -13.28  0.0
4.2  Radius of line 26 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  9.48  -14.23  0.0
4.2  Radius of line 27 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  8.88  -17.07  0.0
4.2  Radius of line 28 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  0.45  -7.95  0.0
4.2  Radius of line 29 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -1.1  -10.44  0.0
4.2  Radius of line 30 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -0.76  -13.38  0.0
4.2  Radius of line 31 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -2.64  -14.91  0.0
4.2  Radius of line 32 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -4.96  -17.07  0.0
4.2  Radius of line 33 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -4.37  -18.28  0.0
4.2  Radius of line 34 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -0.93  -22.32  0.0
4.2  Radius of line 35 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -6.42  -18.96  0.0
4.2  Radius of line 36 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -7.45  -18.44  0.0
4.2  Radius of line 37 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -8.41  -19.21  0.0
4.2  Radius of line 38 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -8.41  -19.3  0.0
4.2  Radius of line 39 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -9.17  -19.98  0.0
4.2  Radius of line 40 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -10.39  -17.92  0.0
4.2  Radius of line 41 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -11.75  -17.5  0.0
4.2  Radius of line 42 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -9.17  -22.32  0.0
4.2  Radius of line 43 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -10.9  -23.08  0.0
4.2  Radius of line 44 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -11.58  -24.37  0.0
4.2  Radius of line 45 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -12.71  -25.57  0.0
4.2  Radius of line 46 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -12.36  -27.64  0.0
4.2  Radius of line 47 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -11.67  -28.25  0.0
4.2  Radius of line 48 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -11.5  -28.32  0.0
4.2  Radius of line 49 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -10.82  -28.94  0.0
4.2  Radius of line 50 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -10.56  -29.53  0.0
4.2  Radius of line 51 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -9.0  -30.66  0.0
4.2  Radius of line 52 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -8.92  -30.73  0.0
4.2  Radius of line 53 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -8.75  -30.73  0.0
4.2  Radius of line 54 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -6.95  -31.6  0.0
4.2  Radius of line 55 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -6.78  -31.85  0.0
4.2  Radius of line 56 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -6.08  -32.2  0.0
4.2  Radius of line 57 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -5.91  -32.2  0.0
4.2  Radius of line 58 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -13.48  -27.12  0.0
4.2  Radius of line 59 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -13.48  -27.03  0.0
4.2  Radius of line 60 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -12.18  -29.28  0.0
4.2  Radius of line 61 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -12.27  -30.14  0.0
4.2  Radius of line 62 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -12.27  -30.48  0.0
4.2  Radius of line 63 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -12.36  -31.17  0.0
4.2  Radius of line 64 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -12.36  -31.33  0.0
4.2  Radius of line 65 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -11.08  -33.75  0.0
4.2  Radius of line 66 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -10.47  -34.78  0.0
4.2  Radius of line 67 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -10.03  -34.78  0.0
4.2  Radius of line 68 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -9.96  -34.78  0.0
4.2  Radius of line 69 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -14.16  -33.06  0.0
4.2  Radius of line 70 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -14.51  -33.92  0.0
4.2  Radius of line 71 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -14.68  -34.09  0.0
4.2  Radius of line 72 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -16.05  -35.29  0.0
4.2  Radius of line 73 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  13.68  9.41  0.0
4.2  Radius of line 74 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  16.44  8.63  0.0
4.2  Radius of line 338 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -4.04  6.83  0.2
4.2  Radius of line 339 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -8.16  7.69  0.14
4.2  Radius of line 340 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -14.44  10.35  0.2
4.2  Radius of line 341 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -19.29  6.01  0.2
4.2  Radius of line 342 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -19.42  5.88  0.2
4.2  Radius of line 343 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -19.94  5.79  0.2
4.2  Radius of line 344 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -26.48  8.03  0.2
4.2  Radius of line 345 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -28.21  8.72  0.2
4.2  Radius of line 346 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -28.21  8.72  0.14
4.2  Radius of line 347 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -25.01  13.88  0.2
4.2  Radius of line 348 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -18.32  15.5  0.2
2.5  Seg length ending at pt. 5 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  -5.13  2.1  0.0
2.5  Seg length ending at pt. 11 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  -4.79  -0.39  0.0
2.5  Seg length ending at pt. 38 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  -8.41  -19.3  0.0
2.5  Seg length ending at pt. 59 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  -13.48  -27.03  0.0
2.5  Seg length ending at pt. 68 <= 0.1 at 0.07.  (removed)
     A       X, Y, Z:  -9.96  -34.78  0.0
2.4  Seg length ending at pt. 73 >= 6.0 stdevs above mean at 11.1146.  (no action taken)
     B1      X, Y, Z:  13.68  9.41  0.0
2.5  Seg length ending at pt. 104 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  29.51  4.75  0.0
2.5  Seg length ending at pt. 113 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  22.8  1.84  0.0
2.5  Seg length ending at pt. 119 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  26.76  1.5  0.0
2.5  Seg length ending at pt. 125 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  2.68  23.51  -0.1
2.5  Seg length ending at pt. 141 <= 0.1 at 0.07.  (removed)
     A       X, Y, Z:  -9.26  37.42  -0.1
2.5  Seg length ending at pt. 163 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  -14.85  38.81  -0.05
2.5  Seg length ending at pt. 171 <= 0.1 at 0.07.  (removed)
     A       X, Y, Z:  -18.89  40.0  -0.05
2.5  Seg length ending at pt. 180 <= 0.1 at 0.07.  (removed)
     A       X, Y, Z:  -21.3  34.6  -0.05
2.5  Seg length ending at pt. 187 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  -23.19  28.05  -0.05
2.5  Seg length ending at pt. 213 <= 0.1 at 0.04.  (removed)
     A       X, Y, Z:  8.69  27.62  -0.14
2.5  Seg length ending at pt. 215 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  7.07  27.98  -0.1
2.5  Seg length ending at pt. 219 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  5.17  26.08  -0.1
2.5  Seg length ending at pt. 231 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  13.68  24.44  -0.14
2.5  Seg length ending at pt. 238 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  17.21  26.85  -0.1
2.5  Seg length ending at pt. 243 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  13.42  31.85  -0.1
2.5  Seg length ending at pt. 246 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  12.75  34.25  -0.1
2.5  Seg length ending at pt. 251 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  11.53  32.02  -0.1
2.5  Seg length ending at pt. 296 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  2.77  53.07  -0.1
2.5  Seg length ending at pt. 313 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  11.19  46.79  -0.1
2.5  Seg length ending at pt. 319 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  12.06  41.39  -0.1
2.5  Seg length ending at pt. 324 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  13.85  42.5  -0.1
2.5  Seg length ending at pt. 326 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  11.97  47.92  -0.1
2.5  Seg length ending at pt. 331 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  11.97  50.92  -0.1
2.5  Seg length ending at pt. 346 <= 0.1 at 0.06.  (removed)
     A       X, Y, Z:  -28.21  8.72  0.14
2.1  Line 1 has 6 daughters.  Type is 1.  (no action taken)
     B1      X, Y, Z:  2.62  8.31  0.0
 
 


Number of type A irregularities = 29
Number of type B1 irregularities = 84
Number of type B2 irregularities = 0
Number of type C irregularities = 0
