# Standardization file for C:\Users\karot\Desktop\gaa2ct\data_autoproc\Temp_LMeasure\LPS_microglia_Naive_3_Sec_1_Cell3.asc.swc created with StdSwc version 1.31 on 12/19/24.
# Edited SWC file saved as C:\Users\karot\Desktop\gaa2ct\data_autoproc\Temp_LMeasure\LPS_microglia_Naive_3_Sec_1_Cell3.asc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
4.2  Radius of line 4 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  11.25  -8.18  2.85
4.2  Radius of line 5 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  12.03  -7.94  2.85
4.2  Radius of line 6 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  12.11  -7.94  2.85
4.2  Radius of line 7 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  14.35  -8.01  2.85
4.2  Radius of line 8 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  14.35  -8.01  2.79
4.2  Radius of line 9 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  12.46  -11.39  2.79
4.2  Radius of line 10 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  12.38  -11.55  2.79
4.2  Radius of line 11 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  15.22  -12.91  2.79
4.2  Radius of line 12 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  11.94  -14.13  2.79
4.2  Radius of line 13 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  14.86  -18.33  2.79
4.2  Radius of line 14 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  11.42  -21.94  -0.75
4.2  Radius of line 15 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  11.42  -21.94  -0.69
4.2  Radius of line 16 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  9.36  -26.16  -0.69
4.2  Radius of line 17 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  9.63  -27.53  -0.69
4.2  Radius of line 18 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  10.66  -31.41  -0.69
4.2  Radius of line 19 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  5.24  -35.88  -0.69
4.2  Radius of line 20 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  3.87  -39.74  -0.69
4.2  Radius of line 21 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  0.93  -32.35  -0.69
4.2  Radius of line 22 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  0.93  -32.25  -0.69
4.2  Radius of line 23 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  16.07  -30.03  -0.69
4.2  Radius of line 24 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  16.07  -30.03  -0.75
4.2  Radius of line 25 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  8.59  -13.17  2.14
4.2  Radius of line 26 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  10.14  -11.55  2.79
4.2  Radius of line 27 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  16.51  -8.97  2.79
4.2  Radius of line 28 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  24.32  -11.19  2.79
4.2  Radius of line 29 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  31.21  -11.89  2.79
4.2  Radius of line 30 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  37.57  -12.58  2.79
4.2  Radius of line 31 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  43.5  -12.83  2.79
4.2  Radius of line 32 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  43.67  -12.75  2.79
4.2  Radius of line 33 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  44.96  -12.49  2.79
4.2  Radius of line 34 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  45.49  -12.49  2.79
4.2  Radius of line 35 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  47.29  -11.8  2.79
4.2  Radius of line 36 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  47.29  -11.72  2.79
4.2  Radius of line 37 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  47.72  -10.85  2.79
4.2  Radius of line 38 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  21.41  -6.29  2.79
4.2  Radius of line 39 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  15.48  -4.41  2.85
4.2  Radius of line 40 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  15.56  -3.72  2.85
4.2  Radius of line 41 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -0.6  -8.1  2.89
4.2  Radius of line 42 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -1.29  -8.1  2.89
4.2  Radius of line 43 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -0.85  -8.01  2.89
4.2  Radius of line 44 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -2.75  -8.01  2.89
4.2  Radius of line 45 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -3.0  -8.01  2.89
4.2  Radius of line 46 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -7.05  -6.21  2.89
4.2  Radius of line 47 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -8.85  -7.16  2.89
4.2  Radius of line 48 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -10.03  -13.77  2.89
4.2  Radius of line 49 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -10.07  -13.94  2.89
4.2  Radius of line 50 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -11.17  -16.01  2.89
4.2  Radius of line 51 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -16.08  -8.1  2.89
4.2  Radius of line 52 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -12.13  -4.75  2.89
4.2  Radius of line 53 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -4.82  -10.59  2.89
4.2  Radius of line 54 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  10.57  -3.2  1.75
4.2  Radius of line 55 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  11.34  -2.52  1.75
4.2  Radius of line 56 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  12.81  -1.48  1.75
4.2  Radius of line 57 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  13.92  -0.2  1.75
4.2  Radius of line 58 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  14.35  0.32  1.75
4.2  Radius of line 59 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  16.67  2.72  1.75
4.2  Radius of line 60 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  16.76  2.81  1.75
4.2  Radius of line 61 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  19.51  3.58  1.75
4.2  Radius of line 62 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  22.6  3.58  1.75
4.2  Radius of line 63 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  22.78  3.58  1.75
4.2  Radius of line 64 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  25.96  3.24  1.75
4.2  Radius of line 65 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  31.12  4.32  1.75
4.2  Radius of line 66 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  31.3  4.36  1.75
4.2  Radius of line 67 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  31.3  4.44  1.75
4.2  Radius of line 68 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  35.77  5.91  1.75
4.2  Radius of line 69 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  38.43  8.06  1.75
4.2  Radius of line 70 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  42.47  11.91  1.75
4.2  Radius of line 71 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  46.43  13.13  1.75
4.2  Radius of line 72 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  47.03  14.07  1.75
4.2  Radius of line 73 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  51.08  15.97  1.75
4.2  Radius of line 74 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  51.25  16.05  1.75
4.2  Radius of line 75 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  50.39  21.71  1.75
4.2  Radius of line 76 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  50.13  25.58  1.75
4.2  Radius of line 77 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  48.5  30.14  1.75
4.2  Radius of line 78 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  49.1  34.61  1.75
4.2  Radius of line 79 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  50.74  38.06  1.75
4.2  Radius of line 80 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  49.65  43.38  1.75
4.2  Radius of line 81 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  49.61  43.56  1.75
4.2  Radius of line 82 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  50.74  47.25  1.75
4.2  Radius of line 83 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  45.92  42.1  1.75
4.2  Radius of line 84 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  53.82  39.95  1.75
4.2  Radius of line 85 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  55.97  38.82  1.75
4.2  Radius of line 86 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  59.25  44.15  1.75
4.2  Radius of line 87 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  54.25  49.57  1.75
4.2  Radius of line 88 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  63.54  40.81  1.75
4.2  Radius of line 89 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  44.1  28.94  1.75
4.2  Radius of line 90 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  54.35  25.85  1.75
4.2  Radius of line 91 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  54.95  17.0  1.75
4.2  Radius of line 92 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  57.43  15.78  1.75
4.2  Radius of line 93 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  52.79  9.25  1.75
4.2  Radius of line 94 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  38.86  18.19  1.75
4.2  Radius of line 95 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  41.71  13.03  1.75
4.2  Radius of line 96 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  26.73  7.87  1.75
4.2  Radius of line 97 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  27.0  0.4  1.75
4.2  Radius of line 98 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  24.32  8.74  1.75
4.2  Radius of line 99 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  24.32  8.83  1.75
4.2  Radius of line 100 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  20.71  -0.89  1.75
4.2  Radius of line 101 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  18.66  5.48  1.75
4.2  Radius of line 102 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.45  2.54  1.75
4.2  Radius of line 103 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.45  3.5  1.75
4.2  Radius of line 104 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.45  6.94  1.75
4.2  Radius of line 105 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.37  7.7  1.75
4.2  Radius of line 106 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.11  11.15  1.75
4.2  Radius of line 107 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.93  14.92  1.75
4.2  Radius of line 108 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.96  15.09  1.75
4.2  Radius of line 109 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.45  21.12  1.75
4.2  Radius of line 110 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  1.45  21.21  1.75
4.2  Radius of line 111 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -4.04  23.69  1.75
4.2  Radius of line 112 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -9.38  21.98  1.75
4.2  Radius of line 113 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -14.88  20.44  1.75
4.2  Radius of line 114 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -20.46  18.03  1.75
4.2  Radius of line 115 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -27.26  11.49  1.8
4.2  Radius of line 116 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -33.36  10.11  1.85
4.2  Radius of line 117 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -28.21  5.65  1.75
4.2  Radius of line 118 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -28.73  24.91  1.75
4.2  Radius of line 119 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -28.73  24.98  1.8
4.2  Radius of line 120 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -30.44  27.57  1.8
4.2  Radius of line 121 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -30.44  27.57  1.75
4.2  Radius of line 122 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -34.49  29.71  1.75
4.2  Radius of line 123 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -34.49  29.8  1.75
4.2  Radius of line 124 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -23.91  30.83  1.75
4.2  Radius of line 125 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -6.62  28.17  1.75
4.2  Radius of line 126 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  6.09  26.28  1.75
4.2  Radius of line 127 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  6.19  26.28  1.75
4.2  Radius of line 128 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  9.19  28.17  1.75
4.2  Radius of line 129 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  13.66  30.14  1.75
4.2  Radius of line 130 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  10.83  33.59  1.75
4.2  Radius of line 131 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -3.43  13.47  1.75
4.2  Radius of line 132 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  6.95  14.07  1.75
4.2  Radius of line 133 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -0.52  -8.53  1.55
4.2  Radius of line 134 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -1.37  -8.53  1.55
4.2  Radius of line 135 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -6.37  -8.44  1.55
4.2  Radius of line 136 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -8.68  -7.25  4.2
4.2  Radius of line 137 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -14.87  -7.08  4.15
4.2  Radius of line 138 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -15.05  -7.08  4.15
4.2  Radius of line 139 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -15.05  -7.08  4.2
4.2  Radius of line 140 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -17.28  -12.83  4.2
4.2  Radius of line 141 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -18.92  -3.45  5.4
4.2  Radius of line 142 at 0.045 <= 0.05.  (no action taken)
     B1      X, Y, Z:  -10.58  -14.64  4.2
2.5  Seg length ending at pt. 6 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  12.11  -7.94  2.85
2.5  Seg length ending at pt. 8 <= 0.1 at 0.06.  (removed)
     A       X, Y, Z:  14.35  -8.01  2.79
2.5  Seg length ending at pt. 15 <= 0.1 at 0.06.  (removed)
     A       X, Y, Z:  11.42  -21.94  -0.69
2.5  Seg length ending at pt. 24 <= 0.1 at 0.06.  (removed)
     A       X, Y, Z:  16.07  -30.03  -0.75
2.5  Seg length ending at pt. 36 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  47.29  -11.72  2.79
2.5  Seg length ending at pt. 67 <= 0.1 at 0.08.  (removed)
     A       X, Y, Z:  31.3  4.44  1.75
2.5  Seg length ending at pt. 99 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  24.32  8.83  1.75
2.5  Seg length ending at pt. 110 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  1.45  21.21  1.75
2.5  Seg length ending at pt. 119 <= 0.1 at 0.086.  (removed)
     A       X, Y, Z:  -28.73  24.98  1.8
2.5  Seg length ending at pt. 121 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  -30.44  27.57  1.75
2.5  Seg length ending at pt. 123 <= 0.1 at 0.09.  (removed)
     A       X, Y, Z:  -34.49  29.8  1.75
2.5  Seg length ending at pt. 139 <= 0.1 at 0.05.  (removed)
     A       X, Y, Z:  -15.05  -7.08  4.2
2.2  Line 1 links to 8     Changed to -1
     A       X, Y, Z:  -2.66  -5.66  0.0
2.1  Line 1 has 6 daughters.  Type is 1.  (no action taken)
     B1      X, Y, Z:  -2.66  -5.66  0.0
 
 


Number of type A irregularities = 13
Number of type B1 irregularities = 140
Number of type B2 irregularities = 0
Number of type C irregularities = 0
