# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\Mouse_CA2_Mc_Cell_12.imx.swc.swc created with StdSwc version 1.31 on 4/25/19.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\Mouse_CA2_Mc_Cell_12.imx.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
4.3  Radius of line 4 at 5.46605 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  435.23  321.89  23.7
4.3  Radius of line 5 at 5.93255 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  433.49  321.74  24.04
4.3  Radius of line 6 at 5.76195 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  432.24  321.25  24.53
4.3  Radius of line 7 at 5.4373 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  431.09  320.75  25.06
4.3  Radius of line 8 at 5.05345 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  430.0  320.31  25.6
4.3  Radius of line 9 at 4.50314 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  428.9  319.96  26.12
4.3  Radius of line 10 at 4.02025 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  427.78  319.69  26.6
4.3  Radius of line 11 at 3.78012 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  426.63  319.45  27.08
4.3  Radius of line 12 at 3.55251 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  425.47  319.22  27.59
4.3  Radius of line 13 at 3.18241 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  424.27  319.05  28.12
4.3  Radius of line 14 at 2.88434 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  423.05  318.95  28.66
4.3  Radius of line 15 at 2.76763 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  421.79  318.91  29.2
4.3  Radius of line 22 at 4.76045 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  437.83  321.46  23.55
4.5  Radius of terminal line 23 at 4.68606 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  439.32  322.44  22.88
4.3  Radius of line 24 at 4.68606 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  439.32  322.44  22.88
4.3  Radius of line 25 at 4.31555 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  440.9  322.89  22.48
4.3  Radius of line 26 at 3.99109 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  442.5  322.94  22.38
4.3  Radius of line 27 at 3.52351 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  444.04  322.91  22.48
4.3  Radius of line 28 at 2.91666 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  445.49  322.93  22.7
4.3  Radius of line 32 at 4.68606 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  446.95  323.23  23.45
4.3  Radius of line 33 at 4.68606 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  446.32  323.17  23.41
4.3  Radius of line 34 at 4.68606 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  445.68  323.1  23.36
4.3  Radius of line 35 at 4.68606 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  444.41  322.97  23.26
4.3  Radius of line 36 at 4.68606 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  439.32  322.44  22.88
4.3  Radius of line 37 at 4.60547 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  439.96  323.07  21.61
4.3  Radius of line 38 at 4.37368 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  441.0  323.5  20.68
4.3  Radius of line 39 at 3.88955 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  442.16  323.9  19.94
4.3  Radius of line 40 at 3.01544 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  443.2  324.42  19.29
4.3  Radius of line 79 at 4.68606 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  439.32  322.44  22.88
4.3  Radius of line 80 at 3.78046 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  440.13  322.4  22.2
4.3  Radius of line 81 at 3.78046 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  440.94  322.36  21.53
4.3  Radius of line 82 at 3.22149 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  442.52  321.92  20.67
4.3  Radius of line 83 at 2.98974 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  443.97  321.14  20.18
4.3  Radius of line 84 at 2.86196 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  445.25  320.18  19.9
2.5  Seg length ending at pt. 22 <= 0.1 at 0.  (removed)
     A       X, Y, Z:  437.83  321.46  23.55
2.4  Seg length ending at pt. 24 >= 6.0 stdevs above mean at 27.2554.  (no action taken)
     B1      X, Y, Z:  439.32  322.44  22.88
2.4  Seg length ending at pt. 110 >= 6.0 stdevs above mean at 37.7338.  (no action taken)
     B1      X, Y, Z:  465.81  294.77  21.22
2.4  Seg length ending at pt. 203 >= 6.0 stdevs above mean at 38.3419.  (no action taken)
     B1      X, Y, Z:  465.81  294.77  21.22
2.4  Seg length ending at pt. 362 >= 6.0 stdevs above mean at 17.1413.  (no action taken)
     B1      X, Y, Z:  519.27  234.87  18.45
2.4  Seg length ending at pt. 406 >= 6.0 stdevs above mean at 43.1385.  (no action taken)
     B1      X, Y, Z:  520.15  234.17  19.24
2.4  Seg length ending at pt. 588 >= 6.0 stdevs above mean at 14.529.  (no action taken)
     B1      X, Y, Z:  467.28  314.05  23.67
2.4  Seg length ending at pt. 604 >= 6.0 stdevs above mean at 18.2699.  (no action taken)
     B1      X, Y, Z:  481.47  308.42  23.5
2.4  Seg length ending at pt. 648 >= 6.0 stdevs above mean at 19.1483.  (no action taken)
     B1      X, Y, Z:  513.13  307.0  17.52
2.4  Seg length ending at pt. 1515 >= 6.0 stdevs above mean at 40.1643.  (no action taken)
     B1      X, Y, Z:  484.55  330.56  13.56
2.4  Seg length ending at pt. 1526 >= 6.0 stdevs above mean at 39.5639.  (no action taken)
     B1      X, Y, Z:  484.55  330.56  13.56
2.5  Seg length ending at pt. 1909 <= 0.1 at 0.0583.  (removed)
     A       X, Y, Z:  515.7  349.31  13.1
2.5  Seg length ending at pt. 1921 <= 0.1 at 0.0583.  (removed)
     A       X, Y, Z:  515.7  349.31  13.1
2.4  Seg length ending at pt. 2275 >= 6.0 stdevs above mean at 25.5075.  (no action taken)
     B1      X, Y, Z:  414.16  318.4  32.55
2.4  Seg length ending at pt. 2679 >= 6.0 stdevs above mean at 28.9375.  (no action taken)
     B1      X, Y, Z:  391.21  335.0  64.44
2.4  Seg length ending at pt. 2738 >= 6.0 stdevs above mean at 29.4601.  (no action taken)
     B1      X, Y, Z:  375.76  344.29  87.74
2.4  Seg length ending at pt. 3148 >= 6.0 stdevs above mean at 25.5075.  (no action taken)
     B1      X, Y, Z:  414.16  318.4  32.55
2.4  Seg length ending at pt. 4630 >= 6.0 stdevs above mean at 71.3594.  (no action taken)
     B1      X, Y, Z:  366.62  275.19  39.24
2.7  Line 363 of rad 1.5 is an included side branch.  (removed)
     A      X, Y, Z:  520.15  234.17  19.24
2.7  Line 649 of rad 1.5 is an included side branch.  (removed)
     A      X, Y, Z:  514.42  306.54  17.56
2.6  Line 21 and line 2275 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  414.16  318.4  32.55
2.6  Line 21 and line 3148 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  414.16  318.4  32.55
2.6  Line 23 and line 24 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  439.32  322.44  22.88
2.6  Line 23 and line 36 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  439.32  322.44  22.88
2.6  Line 23 and line 79 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  439.32  322.44  22.88
2.6  Line 24 and line 36 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  439.32  322.44  22.88
2.6  Line 24 and line 79 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  439.32  322.44  22.88
2.6  Line 36 and line 80 have the same coordinates.  (second line removed)
     A      X, Y, Z:  439.32  322.44  22.88
2.6  Line 78 and line 1515 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  484.55  330.56  13.56
2.6  Line 78 and line 1526 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  484.55  330.56  13.56
2.6  Line 109 and line 110 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  465.81  294.77  21.22
2.6  Line 109 and line 203 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  465.81  294.77  21.22
2.6  Line 110 and line 203 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  465.81  294.77  21.22
2.6  Line 145 and line 188 have the same coordinates.  (second line removed)
     A      X, Y, Z:  505.36  277.08  16.86
2.6  Line 207 and line 274 have the same coordinates.  (second line removed)
     A      X, Y, Z:  468.25  291.58  20.32
2.6  Line 215 and line 255 have the same coordinates.  (second line removed)
     A      X, Y, Z:  472.74  283.81  16.01
2.6  Line 312 and line 330 have the same coordinates.  (second line removed)
     A      X, Y, Z:  502.92  254.06  18.99
2.6  Line 348 and line 423 have the same coordinates.  (second line removed)
     A      X, Y, Z:  518.35  235.77  17.9
2.6  Line 349 and line 362 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  519.27  234.87  18.45
2.6  Line 364 and line 406 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  520.15  234.17  19.24
2.6  Line 455 and line 1587 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  449.49  323.5  23.65
2.6  Line 464 and line 567 have the same coordinates.  (second line removed)
     A      X, Y, Z:  458.06  318.04  22.75
2.6  Line 483 and line 512 have the same coordinates.  (second line removed)
     A      X, Y, Z:  479.7  316.07  15.18
2.6  Line 514 and line 527 have the same coordinates.  (second line removed)
     A      X, Y, Z:  481.88  315.37  13.95
2.6  Line 569 and line 1483 have the same coordinates.  (second line removed)
     A      X, Y, Z:  460.57  316.85  23.43
2.6  Line 570 and line 591 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  461.7  316.26  23.73
2.6  Line 603 and line 927 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  477.0  316.52  24.69
2.6  Line 603 and line 950 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  477.0  316.52  24.69
2.6  Line 604 and line 1055 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  481.47  308.42  23.5
2.6  Line 624 and line 853 have the same coordinates.  (second line removed)
     A      X, Y, Z:  505.63  308.72  18.44
2.6  Line 629 and line 826 have the same coordinates.  (second line removed)
     A      X, Y, Z:  511.84  307.52  17.61
2.6  Line 630 and line 648 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  513.13  307.0  17.52
2.6  Line 650 and line 656 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  514.42  306.54  17.56
2.6  Line 650 and line 692 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  514.42  306.54  17.56
2.6  Line 656 and line 693 have the same coordinates.  (second line removed)
     A      X, Y, Z:  514.42  306.54  17.56
2.6  Line 707 and line 719 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  518.12  305.6  18.29
2.6  Line 722 and line 739 have the same coordinates.  (second line removed)
     A      X, Y, Z:  520.46  304.93  18.87
2.6  Line 745 and line 761 have the same coordinates.  (second line removed)
     A      X, Y, Z:  527.88  303.12  19.15
2.6  Line 830 and line 843 have the same coordinates.  (second line removed)
     A      X, Y, Z:  516.67  309.47  16.72
2.6  Line 927 and line 950 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  477.0  316.52  24.69
2.6  Line 974 and line 1010 have the same coordinates.  (second line removed)
     A      X, Y, Z:  505.2  320.91  30.37
2.6  Line 981 and line 997 have the same coordinates.  (second line removed)
     A      X, Y, Z:  513.75  319.73  30.53
2.6  Line 1084 and line 1131 have the same coordinates.  (second line removed)
     A      X, Y, Z:  514.44  292.08  23.49
2.6  Line 1145 and line 1233 have the same coordinates.  (second line removed)
     A      X, Y, Z:  530.17  281.5  24.74
2.6  Line 1151 and line 1167 have the same coordinates.  (second line removed)
     A      X, Y, Z:  536.65  279.06  24.62
2.6  Line 1170 and line 1212 have the same coordinates.  (second line removed)
     A      X, Y, Z:  540.16  276.83  24.28
2.6  Line 1263 and line 1286 have the same coordinates.  (second line removed)
     A      X, Y, Z:  530.29  253.37  44.0
2.6  Line 1293 and line 1382 have the same coordinates.  (second line removed)
     A      X, Y, Z:  531.0  247.59  49.17
2.6  Line 1316 and line 1343 have the same coordinates.  (second line removed)
     A      X, Y, Z:  536.21  223.41  59.64
2.6  Line 1392 and line 1409 have the same coordinates.  (second line removed)
     A      X, Y, Z:  529.24  249.32  59.18
2.6  Line 1515 and line 1526 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  484.55  330.56  13.56
2.6  Line 1532 and line 1573 have the same coordinates.  (second line removed)
     A      X, Y, Z:  490.16  330.35  10.24
2.6  Line 1626 and line 1886 have the same coordinates.  (second line removed)
     A      X, Y, Z:  491.13  338.55  18.07
2.6  Line 1629 and line 1757 have the same coordinates.  (second line removed)
     A      X, Y, Z:  492.8  340.12  18.0
2.6  Line 1901 and line 2010 have the same coordinates.  (second line removed)
     A      X, Y, Z:  506.72  349.5  13.74
2.6  Line 2027 and line 2101 have the same coordinates.  (second line removed)
     A      X, Y, Z:  524.94  361.75  11.12
2.6  Line 2275 and line 3149 have the same coordinates.  (second line removed)
     A      X, Y, Z:  414.16  318.4  32.55
2.6  Line 2292 and line 2518 have the same coordinates.  (second line removed)
     A      X, Y, Z:  399.79  324.83  44.36
2.6  Line 2298 and line 2380 have the same coordinates.  (second line removed)
     A      X, Y, Z:  393.13  323.84  46.29
2.6  Line 2314 and line 2337 have the same coordinates.  (second line removed)
     A      X, Y, Z:  378.84  333.02  51.96
2.6  Line 2388 and line 2413 have the same coordinates.  (second line removed)
     A      X, Y, Z:  385.81  319.12  49.19
2.6  Line 2416 and line 2435 have the same coordinates.  (second line removed)
     A      X, Y, Z:  382.99  320.09  49.29
2.6  Line 2462 and line 2487 have the same coordinates.  (second line removed)
     A      X, Y, Z:  351.92  332.92  58.18
2.6  Line 2527 and line 3123 have the same coordinates.  (second line removed)
     A      X, Y, Z:  395.65  328.99  52.34
2.6  Line 2528 and line 2533 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  395.43  329.43  53.31
2.6  Line 2597 and line 2640 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  394.82  330.84  56.1
2.6  Line 2644 and line 3087 have the same coordinates.  (second line removed)
     A      X, Y, Z:  394.46  332.58  58.77
2.6  Line 2645 and line 2680 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  394.36  333.11  59.69
2.6  Line 2738 and line 3057 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  375.76  344.29  87.74
2.6  Line 2749 and line 2870 have the same coordinates.  (second line removed)
     A      X, Y, Z:  370.08  344.47  96.04
2.6  Line 2776 and line 2821 have the same coordinates.  (second line removed)
     A      X, Y, Z:  351.88  340.91  117.72
2.6  Line 2924 and line 2966 have the same coordinates.  (second line removed)
     A      X, Y, Z:  325.45  383.64  123.24
2.6  Line 3174 and line 3231 have the same coordinates.  (second line removed)
     A      X, Y, Z:  389.11  297.71  39.24
2.6  Line 3238 and line 4532 have the same coordinates.  (second line removed)
     A      X, Y, Z:  381.0  295.09  42.24
2.6  Line 3239 and line 3245 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  380.05  294.8  42.97
2.6  Line 3267 and line 3279 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  376.36  294.71  46.13
2.6  Line 3286 and line 3314 have the same coordinates.  (second line removed)
     A      X, Y, Z:  371.01  296.1  50.71
2.6  Line 3330 and line 3358 have the same coordinates.  (second line removed)
     A      X, Y, Z:  356.58  301.91  61.82
2.6  Line 3367 and line 3909 have the same coordinates.  (second line removed)
     A      X, Y, Z:  349.42  303.79  68.18
2.6  Line 3387 and line 3596 have the same coordinates.  (second line removed)
     A      X, Y, Z:  328.02  303.81  78.31
2.6  Line 3424 and line 3459 have the same coordinates.  (second line removed)
     A      X, Y, Z:  311.62  322.74  107.2
2.6  Line 3504 and line 3537 have the same coordinates.  (second line removed)
     A      X, Y, Z:  280.1  340.61  142.35
2.6  Line 3507 and line 3522 have the same coordinates.  (second line removed)
     A      X, Y, Z:  280.17  341.06  144.88
2.6  Line 3539 and line 3557 have the same coordinates.  (second line removed)
     A      X, Y, Z:  278.77  340.96  144.15
2.6  Line 3603 and line 3759 have the same coordinates.  (second line removed)
     A      X, Y, Z:  320.05  303.08  82.34
2.6  Line 3645 and line 3661 have the same coordinates.  (second line removed)
     A      X, Y, Z:  286.66  310.99  112.74
2.6  Line 3950 and line 4428 have the same coordinates.  (second line removed)
     A      X, Y, Z:  316.14  292.47  98.08
2.6  Line 3980 and line 4116 have the same coordinates.  (second line removed)
     A      X, Y, Z:  296.42  294.77  123.38
2.6  Line 3999 and line 4020 have the same coordinates.  (second line removed)
     A      X, Y, Z:  283.4  303.33  137.26
2.6  Line 4025 and line 4052 have the same coordinates.  (second line removed)
     A      X, Y, Z:  279.91  307.03  140.64
2.6  Line 4054 and line 4072 have the same coordinates.  (second line removed)
     A      X, Y, Z:  278.25  308.33  142.1
2.6  Line 4134 and line 4148 have the same coordinates.  (second line removed)
     A      X, Y, Z:  275.11  287.12  129.54
2.6  Line 4165 and line 4181 have the same coordinates.  (second line removed)
     A      X, Y, Z:  253.94  286.42  134.14
2.6  Line 4193 and line 4211 have the same coordinates.  (second line removed)
     A      X, Y, Z:  238.37  285.2  137.55
2.6  Line 4231 and line 4297 have the same coordinates.  (second line removed)
     A      X, Y, Z:  212.26  289.96  139.56
2.6  Line 4300 and line 4315 have the same coordinates.  (second line removed)
     A      X, Y, Z:  208.7  292.1  140.3
2.6  Line 4319 and line 4334 have the same coordinates.  (second line removed)
     A      X, Y, Z:  205.45  296.45  141.18
2.6  Line 4371 and line 4389 have the same coordinates.  (second line removed)
     A      X, Y, Z:  165.09  316.53  148.44
2.6  Line 4534 and line 4556 have the same coordinates.  (second line removed)
     A      X, Y, Z:  378.97  293.63  42.15
2.6  Line 4572 and line 4673 have the same coordinates.  (second line removed)
     A      X, Y, Z:  367.62  276.15  39.38
2.6  Line 4573 and line 4630 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  366.62  275.19  39.24
2.6  Line 4683 and line 4705 have the same coordinates.  (second line removed)
     A      X, Y, Z:  365.77  266.75  46.76
4.4  Line 24 of rad 4.68606 links to 21 of rad 2.23551.  (no action taken)
     B1      X, Y, Z:  439.32  322.44  22.88
4.4  Line 32 of rad 4.68606 links to 31 of rad 1.70606.  (no action taken)
     B1      X, Y, Z:  446.95  323.23  23.45
2.1  Line 1 has 6 daughters.  Type is 1.  (no action taken)
     B1      X, Y, Z:  437.83  321.46  23.55
 
 


Number of type A irregularities = 75
Number of type B1 irregularities = 84
Number of type B2 irregularities = 0
Number of type C irregularities = 0
