# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\Mouse_CA2_Mc_Cell_11.imx.swc.swc created with StdSwc version 1.31 on 4/25/19.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\Mouse_CA2_Mc_Cell_11.imx.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
4.5  Radius of terminal line 4 at 4.39794 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  377.26  225.33  106.4
4.3  Radius of line 5 at 4.39794 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  377.26  225.33  106.4
4.3  Radius of line 6 at 3.81369 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  378.49  224.16  107.61
4.3  Radius of line 7 at 3.27746 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  379.32  223.52  108.28
4.3  Radius of line 8 at 2.779 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  379.96  223.17  108.63
4.3  Radius of line 9 at 2.2613 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  380.59  222.86  108.93
4.3  Radius of line 104 at 4.39794 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  377.26  225.33  106.4
4.5  Radius of terminal line 105 at 4.27696 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  377.35  225.64  105.56
4.3  Radius of line 106 at 4.27696 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  377.35  225.64  105.56
4.3  Radius of line 107 at 3.8121 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  377.76  226.12  104.78
4.3  Radius of line 108 at 3.35256 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  378.21  226.63  104.12
4.3  Radius of line 109 at 2.87722 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  378.64  227.15  103.54
4.3  Radius of line 110 at 2.43674 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  379.07  227.68  103.06
4.3  Radius of line 114 at 4.27696 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  378.93  227.4  103.73
4.3  Radius of line 115 at 4.27696 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  378.14  226.52  104.65
4.3  Radius of line 116 at 4.27696 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  377.35  225.64  105.56
4.3  Radius of line 117 at 4.15757 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  376.64  225.86  105.82
4.3  Radius of line 382 at 4.15757 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  376.64  225.86  105.82
4.3  Radius of line 383 at 3.52482 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  376.1  226.38  105.73
4.3  Radius of line 384 at 2.82411 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  375.67  227.06  105.53
4.3  Radius of line 418 at 4.15757 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  367.32  230.44  102.87
4.3  Radius of line 419 at 4.15757 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  369.65  229.29  103.61
4.3  Radius of line 420 at 4.15757 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  371.98  228.15  104.35
4.3  Radius of line 421 at 4.15757 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  376.64  225.86  105.82
4.3  Radius of line 422 at 4.31842 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  376.95  225.58  105.01
4.3  Radius of line 423 at 4.29071 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  377.14  225.59  104.0
4.3  Radius of line 424 at 4.12568 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  377.24  225.72  102.93
4.3  Radius of line 425 at 3.89788 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  377.31  225.83  101.9
4.3  Radius of line 426 at 3.57738 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  377.37  225.91  100.9
4.3  Radius of line 427 at 3.15676 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  377.43  225.99  99.92
4.3  Radius of line 428 at 2.67869 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  377.5  226.07  98.94
2.4  Seg length ending at pt. 104 >= 6.0 stdevs above mean at 59.9641.  (no action taken)
     B1      X, Y, Z:  377.26  225.33  106.4
2.4  Seg length ending at pt. 418 >= 6.0 stdevs above mean at 10.5279.  (no action taken)
     B1      X, Y, Z:  367.32  230.44  102.87
2.4  Seg length ending at pt. 452 >= 6.0 stdevs above mean at 16.1901.  (no action taken)
     B1      X, Y, Z:  358.01  235.03  99.92
2.4  Seg length ending at pt. 547 >= 6.0 stdevs above mean at 26.0346.  (no action taken)
     B1      X, Y, Z:  376.42  226.65  78.61
2.4  Seg length ending at pt. 568 >= 6.0 stdevs above mean at 26.1863.  (no action taken)
     B1      X, Y, Z:  376.42  226.65  78.61
2.4  Seg length ending at pt. 1020 >= 6.0 stdevs above mean at 13.8205.  (no action taken)
     B1      X, Y, Z:  392.15  257.01  100.19
2.4  Seg length ending at pt. 1166 >= 6.0 stdevs above mean at 24.2917.  (no action taken)
     B1      X, Y, Z:  419.74  247.57  86.88
2.4  Seg length ending at pt. 1189 >= 6.0 stdevs above mean at 24.0485.  (no action taken)
     B1      X, Y, Z:  419.74  247.57  86.88
2.5  Seg length ending at pt. 1307 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  399.13  255.54  82.2
2.5  Seg length ending at pt. 1340 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  399.13  255.54  82.2
2.5  Seg length ending at pt. 1783 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  400.97  277.0  67.87
2.4  Seg length ending at pt. 3355 >= 6.0 stdevs above mean at 64.4756.  (no action taken)
     B1      X, Y, Z:  461.2  394.08  48.94
2.4  Seg length ending at pt. 3575 >= 6.0 stdevs above mean at 41.5643.  (no action taken)
     B1      X, Y, Z:  463.28  441.54  34.1
2.4  Seg length ending at pt. 4465 >= 6.0 stdevs above mean at 33.2748.  (no action taken)
     B1      X, Y, Z:  476.6  397.12  47.88
2.5  Seg length ending at pt. 5141 <= 0.1 at 0.051.  (removed)
     A       X, Y, Z:  400.97  277.0  67.87
2.7  Line 105 of rad 4.27696 is an included side branch.  (removed)
     A      X, Y, Z:  377.35  225.64  105.56
2.6  Line 4 and line 6 have the same coordinates.  (second line removed)
     A      X, Y, Z:  377.26  225.33  106.4
2.6  Line 4 and line 104 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  377.26  225.33  106.4
2.6  Line 106 and line 116 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  377.35  225.64  105.56
2.6  Line 117 and line 382 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  376.64  225.86  105.82
2.6  Line 117 and line 421 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  376.64  225.86  105.82
2.6  Line 118 and line 843 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  380.52  229.15  101.91
2.6  Line 125 and line 223 have the same coordinates.  (second line removed)
     A      X, Y, Z:  382.99  230.61  98.77
2.6  Line 151 and line 179 have the same coordinates.  (second line removed)
     A      X, Y, Z:  385.33  240.15  83.68
2.6  Line 259 and line 308 have the same coordinates.  (second line removed)
     A      X, Y, Z:  403.81  225.45  85.29
2.6  Line 382 and line 421 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  376.64  225.86  105.82
2.6  Line 451 and line 547 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  376.42  226.65  78.61
2.6  Line 451 and line 568 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  376.42  226.65  78.61
2.6  Line 452 and line 591 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  358.01  235.03  99.92
2.6  Line 488 and line 518 have the same coordinates.  (second line removed)
     A      X, Y, Z:  355.73  252.33  80.95
2.6  Line 547 and line 568 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  376.42  226.65  78.61
2.6  Line 602 and line 703 have the same coordinates.  (second line removed)
     A      X, Y, Z:  350.59  236.6  97.46
2.6  Line 611 and line 633 have the same coordinates.  (second line removed)
     A      X, Y, Z:  345.45  237.01  95.15
2.6  Line 716 and line 739 have the same coordinates.  (second line removed)
     A      X, Y, Z:  347.75  245.42  94.45
2.6  Line 866 and line 904 have the same coordinates.  (second line removed)
     A      X, Y, Z:  391.15  239.43  97.41
2.6  Line 906 and line 932 have the same coordinates.  (second line removed)
     A      X, Y, Z:  391.86  240.4  96.6
2.6  Line 934 and line 973 have the same coordinates.  (second line removed)
     A      X, Y, Z:  392.42  241.64  96.02
2.6  Line 975 and line 1058 have the same coordinates.  (second line removed)
     A      X, Y, Z:  393.06  242.89  95.44
2.6  Line 998 and line 1038 have the same coordinates.  (second line removed)
     A      X, Y, Z:  391.84  256.38  100.23
2.6  Line 999 and line 1020 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  392.15  257.01  100.19
2.6  Line 1065 and line 5438 have the same coordinates.  (second line removed)
     A      X, Y, Z:  394.91  246.63  92.34
2.6  Line 1066 and line 1076 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  395.12  247.08  91.78
2.6  Line 1113 and line 1166 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  419.74  247.57  86.88
2.6  Line 1113 and line 1189 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  419.74  247.57  86.88
2.6  Line 1114 and line 1218 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  396.76  250.07  88.58
2.6  Line 1166 and line 1189 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  419.74  247.57  86.88
2.6  Line 1225 and line 1257 have the same coordinates.  (second line removed)
     A      X, Y, Z:  398.13  252.81  84.93
2.6  Line 1259 and line 1303 have the same coordinates.  (second line removed)
     A      X, Y, Z:  398.64  253.89  83.75
2.6  Line 1347 and line 1377 have the same coordinates.  (second line removed)
     A      X, Y, Z:  398.78  259.36  79.46
2.6  Line 1382 and line 5190 have the same coordinates.  (second line removed)
     A      X, Y, Z:  398.97  262.23  77.24
2.6  Line 1383 and line 1392 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  399.05  262.85  76.78
2.6  Line 1435 and line 1460 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  399.7  266.91  73.61
2.6  Line 1463 and line 1492 have the same coordinates.  (second line removed)
     A      X, Y, Z:  399.77  267.99  72.68
2.6  Line 1494 and line 1650 have the same coordinates.  (second line removed)
     A      X, Y, Z:  399.86  269.22  71.71
2.6  Line 1517 and line 1568 have the same coordinates.  (second line removed)
     A      X, Y, Z:  392.76  264.59  55.89
2.6  Line 1596 and line 1617 have the same coordinates.  (second line removed)
     A      X, Y, Z:  383.27  251.76  43.03
2.6  Line 1653 and line 1773 have the same coordinates.  (second line removed)
     A      X, Y, Z:  400.33  271.04  70.45
2.6  Line 1687 and line 1733 have the same coordinates.  (second line removed)
     A      X, Y, Z:  418.07  269.71  54.57
2.6  Line 1784 and line 1808 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  400.98  277.6  67.55
2.6  Line 1821 and line 1858 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  399.96  292.6  63.38
2.6  Line 1870 and line 1897 have the same coordinates.  (second line removed)
     A      X, Y, Z:  400.82  299.89  61.95
2.6  Line 1909 and line 2178 have the same coordinates.  (second line removed)
     A      X, Y, Z:  402.39  308.05  60.57
2.6  Line 1912 and line 1993 have the same coordinates.  (second line removed)
     A      X, Y, Z:  402.51  309.52  60.11
2.6  Line 1933 and line 1950 have the same coordinates.  (second line removed)
     A      X, Y, Z:  391.38  317.1  61.52
2.6  Line 2064 and line 2123 have the same coordinates.  (second line removed)
     A      X, Y, Z:  379.72  341.58  34.41
2.6  Line 2190 and line 2218 have the same coordinates.  (second line removed)
     A      X, Y, Z:  405.67  315.45  58.93
2.6  Line 2226 and line 2260 have the same coordinates.  (second line removed)
     A      X, Y, Z:  407.68  320.56  58.38
2.6  Line 2286 and line 2386 have the same coordinates.  (second line removed)
     A      X, Y, Z:  417.33  334.7  54.68
2.6  Line 2294 and line 2334 have the same coordinates.  (second line removed)
     A      X, Y, Z:  418.78  334.66  48.24
2.6  Line 2422 and line 4272 have the same coordinates.  (second line removed)
     A      X, Y, Z:  434.99  350.49  48.65
2.6  Line 2430 and line 2912 have the same coordinates.  (second line removed)
     A      X, Y, Z:  436.83  355.09  45.89
2.6  Line 2433 and line 2491 have the same coordinates.  (second line removed)
     A      X, Y, Z:  437.39  356.58  44.4
2.6  Line 2511 and line 2779 have the same coordinates.  (second line removed)
     A      X, Y, Z:  440.33  367.62  36.04
2.6  Line 2526 and line 2710 have the same coordinates.  (second line removed)
     A      X, Y, Z:  447.18  375.47  36.07
2.6  Line 2638 and line 2663 have the same coordinates.  (second line removed)
     A      X, Y, Z:  501.65  409.89  7.76
2.6  Line 2924 and line 3854 have the same coordinates.  (second line removed)
     A      X, Y, Z:  436.55  363.38  45.43
2.6  Line 2968 and line 3232 have the same coordinates.  (second line removed)
     A      X, Y, Z:  452.11  389.34  44.98
2.6  Line 2969 and line 2986 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  452.22  389.92  44.46
2.6  Line 3007 and line 3160 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  452.4  399.69  39.5
2.6  Line 3013 and line 3044 have the same coordinates.  (second line removed)
     A      X, Y, Z:  450.97  401.91  36.35
2.6  Line 3248 and line 3377 have the same coordinates.  (second line removed)
     A      X, Y, Z:  460.42  393.52  48.76
2.6  Line 3249 and line 3355 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  461.2  394.08  48.94
2.6  Line 3430 and line 3752 have the same coordinates.  (second line removed)
     A      X, Y, Z:  466.5  427.0  34.36
2.6  Line 3438 and line 3487 have the same coordinates.  (second line removed)
     A      X, Y, Z:  465.68  431.95  34.91
2.6  Line 3501 and line 3703 have the same coordinates.  (second line removed)
     A      X, Y, Z:  463.6  440.94  34.32
2.6  Line 3502 and line 3575 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  463.28  441.54  34.1
2.6  Line 3588 and line 3589 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  456.22  447.03  34.58
2.6  Line 3588 and line 3639 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  456.22  447.03  34.58
2.6  Line 3589 and line 3639 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  456.22  447.03  34.58
2.6  Line 3883 and line 3987 have the same coordinates.  (second line removed)
     A      X, Y, Z:  424.21  378.19  41.49
2.6  Line 3918 and line 3946 have the same coordinates.  (second line removed)
     A      X, Y, Z:  425.14  370.96  13.98
2.6  Line 4034 and line 4138 have the same coordinates.  (second line removed)
     A      X, Y, Z:  411.22  406.98  38.69
2.6  Line 4320 and line 4356 have the same coordinates.  (second line removed)
     A      X, Y, Z:  453.74  377.41  53.43
2.6  Line 4393 and line 4769 have the same coordinates.  (second line removed)
     A      X, Y, Z:  476.76  384.19  48.25
2.6  Line 4413 and line 4499 have the same coordinates.  (second line removed)
     A      X, Y, Z:  476.62  396.96  48.24
2.6  Line 4414 and line 4465 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  476.6  397.12  47.88
2.6  Line 4534 and line 4690 have the same coordinates.  (second line removed)
     A      X, Y, Z:  493.43  413.07  51.11
2.6  Line 4828 and line 5001 have the same coordinates.  (second line removed)
     A      X, Y, Z:  509.67  403.3  35.24
2.6  Line 4956 and line 4978 have the same coordinates.  (second line removed)
     A      X, Y, Z:  584.82  416.35  31.68
2.6  Line 5274 and line 5302 have the same coordinates.  (second line removed)
     A      X, Y, Z:  427.76  261.88  75.88
2.6  Line 5327 and line 5351 have the same coordinates.  (second line removed)
     A      X, Y, Z:  444.74  262.02  76.93
4.4  Line 104 of rad 4.39794 links to 103 of rad 1.03784.  (no action taken)
     B1      X, Y, Z:  377.26  225.33  106.4
4.4  Line 114 of rad 4.27696 links to 113 of rad 1.03784.  (no action taken)
     B1      X, Y, Z:  378.93  227.4  103.73
4.4  Line 418 of rad 4.15757 links to 417 of rad 1.03784.  (no action taken)
     B1      X, Y, Z:  367.32  230.44  102.87
2.1  Line 1 has 4 daughters.  Type is 1.  (no action taken)
     B1      X, Y, Z:  377.6  225.22  107.21
 
 


Number of type A irregularities = 62
Number of type B1 irregularities = 74
Number of type B2 irregularities = 0
Number of type C irregularities = 0
