# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN9_microglia_35.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN9_microglia_35.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  213.59  261.89  12.5
4.3  Radius of line 2 at 3.102 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  213.3  262.1  12.31
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  213.37  262.05  12.35
4.3  Radius of line 4 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  213.44  262.0  12.4
4.3  Radius of line 5 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  213.59  261.89  12.5
4.3  Radius of line 6 at 2.863 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  214.09  261.5  12.16
4.3  Radius of line 2498 at 2.958 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  213.0  262.3  12.22
4.3  Radius of line 2499 at 2.859 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  212.69  262.39  12.34
4.5  Radius of terminal line 2707 at 0.197 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  204.59  270.1  9.5
2.5  Seg length ending at pt. 3 <= 0.1 at 0.0949.  (removed)
     A       X, Y, Z:  213.37  262.05  12.35
2.4  Seg length ending at pt. 1518 >= 6.0 stdevs above mean at 1.0022.  (no action taken)
     B1      X, Y, Z:  198.4  262.89  40.84
2.4  Seg length ending at pt. 1707 >= 6.0 stdevs above mean at 1.0118.  (no action taken)
     B1      X, Y, Z:  224.09  274.89  28.37
2.4  Seg length ending at pt. 1941 >= 6.0 stdevs above mean at 1.1814.  (no action taken)
     B1      X, Y, Z:  205.3  260.1  17.64
2.6  Line 1 and line 5 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  213.59  261.89  12.5
2.6  Line 2385 and line 2397 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  193.5  258.3  19.6
2.1  Line 2 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  213.3  262.1  12.31
 
 


Number of type A irregularities = 1
Number of type B1 irregularities = 15
Number of type B2 irregularities = 0
Number of type C irregularities = 0
