# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN9_microglia_28.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN9_microglia_28.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  137.3  196.4  25.5
4.3  Radius of line 2 at 3.151 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  137.09  196.59  25.26
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  137.3  196.4  25.5
4.3  Radius of line 4 at 3.061 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  137.37  196.25  25.44
4.3  Radius of line 5 at 3.061 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  137.44  196.1  25.38
4.3  Radius of line 6 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  137.37  196.25  25.44
4.5  Radius of terminal line 7 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  137.3  196.4  25.5
4.3  Radius of line 8 at 3.061 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  137.59  195.8  25.26
4.5  Radius of terminal line 1088 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  137.3  196.4  25.5
4.5  Radius of terminal line 1742 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  137.3  196.4  25.5
4.3  Radius of line 1764 at 3.006 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  136.9  196.9  25.1
2.4  Seg length ending at pt. 933 >= 6.0 stdevs above mean at 1.1546.  (no action taken)
     B1      X, Y, Z:  137.9  196.3  26.42
2.4  Seg length ending at pt. 1089 >= 6.0 stdevs above mean at 1.4478.  (no action taken)
     B1      X, Y, Z:  137.8  196.59  26.78
2.5  Seg length ending at pt. 1467 <= 0.1 at 0.0632.  (removed)
     A       X, Y, Z:  138.3  210.92  28.9
2.4  Seg length ending at pt. 1742 >= 6.0 stdevs above mean at 1.3873.  (no action taken)
     B1      X, Y, Z:  137.3  196.4  25.5
2.5  Seg length ending at pt. 1808 <= 0.1 at 0.02.  (removed)
     A       X, Y, Z:  131.09  203.09  21.44
2.7  Line 7 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  137.3  196.4  25.5
2.7  Line 1088 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  137.3  196.4  25.5
2.7  Line 1742 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  137.3  196.4  25.5
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  137.3  196.4  25.5
2.6  Line 4 and line 6 have the same coordinates.  Radii do not match.  (no action taken)
     B1      X, Y, Z:  137.37  196.25  25.44
2.1  Line 1466 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  138.3  210.9  28.96
 
 


Number of type A irregularities = 5
Number of type B1 irregularities = 17
Number of type B2 irregularities = 0
Number of type C irregularities = 0
