# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN9_microglia_25.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN9_microglia_25.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  109.59  135.4  32.18
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  109.59  135.05  32.81
4.3  Radius of line 4 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  109.59  135.09  32.72
4.3  Radius of line 5 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  109.59  135.19  32.54
4.3  Radius of line 6 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  109.59  135.4  32.18
4.5  Radius of terminal line 3778 at 0.203 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  111.09  115.0  46.24
2.5  Seg length ending at pt. 4 <= 0.1 at 0.0985.  (removed)
     A       X, Y, Z:  109.59  135.09  32.72
2.4  Seg length ending at pt. 872 >= 6.0 stdevs above mean at 1.1254.  (no action taken)
     B1      X, Y, Z:  105.29  138.5  32.17
2.5  Seg length ending at pt. 1256 <= 0.1 at 0.0616.  (removed)
     A       X, Y, Z:  121.67  122.54  36.35
2.5  Seg length ending at pt. 2651 <= 0.1 at 0.0781.  (removed)
     A       X, Y, Z:  124.4  127.9  33.06
2.6  Line 1 and line 6 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  109.59  135.4  32.18
2.1  Line 3 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  109.59  135.05  32.81
2.1  Line 1255 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  121.65  122.59  36.38
 
 


Number of type A irregularities = 3
Number of type B1 irregularities = 10
Number of type B2 irregularities = 0
Number of type C irregularities = 0
