# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN9_microglia_1.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN9_microglia_1.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  182.09  80.12  29.78
4.3  Radius of line 2 at 3.229 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  182.0  79.81  29.53
4.3  Radius of line 303 at 3.12 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  181.69  79.56  29.35
4.3  Radius of line 310 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  182.09  80.12  29.78
4.3  Radius of line 311 at 3.028 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  182.8  80.09  30.12
4.3  Radius of line 312 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  182.44  80.1  29.96
4.5  Radius of terminal line 313 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  182.09  80.12  29.78
4.3  Radius of line 1992 at 3.039 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  181.5  79.37  29.08
2.4  Seg length ending at pt. 305 >= 6.0 stdevs above mean at 1.5472.  (no action taken)
     B1      X, Y, Z:  181.69  79.39  28.41
2.4  Seg length ending at pt. 310 >= 6.0 stdevs above mean at 4.2314.  (no action taken)
     B1      X, Y, Z:  182.09  80.12  29.78
2.4  Seg length ending at pt. 1239 >= 6.0 stdevs above mean at 1.3349.  (no action taken)
     B1      X, Y, Z:  174.3  76.23  43.39
2.7  Line 313 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  182.09  80.12  29.78
2.6  Line 1 and line 310 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  182.09  80.12  29.78
4.4  Line 310 of rad 3.5 links to 309 of rad 1.006.  (no action taken)
     B1      X, Y, Z:  182.09  80.12  29.78
 
 


Number of type A irregularities = 1
Number of type B1 irregularities = 13
Number of type B2 irregularities = 0
Number of type C irregularities = 0
