# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN8_microglia_6.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN8_microglia_6.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  191.19  71.6  35.88
4.3  Radius of line 2 at 3.269 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  191.5  71.6  35.43
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  191.19  71.6  35.88
4.5  Radius of terminal line 275 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  191.19  71.6  35.88
4.3  Radius of line 465 at 3.199 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  191.8  71.46  35.28
4.3  Radius of line 466 at 3.142 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  192.09  71.23  35.29
4.3  Radius of line 467 at 3.099 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  192.4  71.07  35.35
2.5  Seg length ending at pt. 656 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  198.87  57.9  38.98
2.4  Seg length ending at pt. 1637 >= 6.0 stdevs above mean at 1.1783.  (no action taken)
     B1      X, Y, Z:  185.69  54.56  34.24
2.5  Seg length ending at pt. 1809 <= 0.1 at 0.0831.  (removed)
     A       X, Y, Z:  185.42  67.31  25.56
2.4  Seg length ending at pt. 2062 >= 6.0 stdevs above mean at 1.1601.  (no action taken)
     B1      X, Y, Z:  199.0  40.2  38.38
2.7  Line 275 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  191.19  71.6  35.88
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  191.19  71.6  35.88
2.1  Line 655 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  198.94  57.9  38.91
2.1  Line 1808 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  185.44  67.23  25.57
 
 


Number of type A irregularities = 3
Number of type B1 irregularities = 12
Number of type B2 irregularities = 0
Number of type C irregularities = 0
