# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN7_microglia_7.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN7_microglia_7.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  262.8  196.0  19.66
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  262.7  195.9  19.39
4.3  Radius of line 4 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  262.8  196.0  19.66
4.5  Radius of terminal line 611 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  262.8  196.0  19.66
2.4  Seg length ending at pt. 401 >= 6.0 stdevs above mean at 1.1893.  (no action taken)
     B1      X, Y, Z:  251.4  172.19  27.5
2.4  Seg length ending at pt. 1224 >= 6.0 stdevs above mean at 1.1438.  (no action taken)
     B1      X, Y, Z:  269.89  199.19  13.85
2.5  Seg length ending at pt. 1455 <= 0.1 at 0.099.  (removed)
     A       X, Y, Z:  272.97  210.5  8.03
2.4  Seg length ending at pt. 1457 >= 6.0 stdevs above mean at 1.1209.  (no action taken)
     B1      X, Y, Z:  272.89  210.8  6.87
2.4  Seg length ending at pt. 1638 >= 6.0 stdevs above mean at 1.307.  (no action taken)
     B1      X, Y, Z:  263.39  196.8  19.82
2.4  Seg length ending at pt. 1988 >= 6.0 stdevs above mean at 1.3155.  (no action taken)
     B1      X, Y, Z:  256.1  188.09  9.52
2.7  Line 611 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  262.8  196.0  19.66
2.6  Line 1 and line 4 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  262.8  196.0  19.66
2.1  Line 1454 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  273.04  210.5  8.1
 
 


Number of type A irregularities = 2
Number of type B1 irregularities = 11
Number of type B2 irregularities = 0
Number of type C irregularities = 0
