# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN7_microglia_33.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN7_microglia_33.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  211.0  87.62  35.32
4.3  Radius of line 2 at 3.24 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  211.3  87.65  35.17
4.3  Radius of line 3 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  211.0  87.62  35.32
4.3  Radius of line 4 at 3.104 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  210.59  87.98  35.11
4.5  Radius of terminal line 1045 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  211.0  87.62  35.32
4.3  Radius of line 1111 at 3.125 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  211.5  87.67  34.9
2.4  Seg length ending at pt. 54 >= 6.0 stdevs above mean at 1.1725.  (no action taken)
     B1      X, Y, Z:  210.09  92.73  39.36
2.4  Seg length ending at pt. 73 >= 6.0 stdevs above mean at 1.1743.  (no action taken)
     B1      X, Y, Z:  211.3  90.71  49.35
2.4  Seg length ending at pt. 199 >= 6.0 stdevs above mean at 1.0775.  (no action taken)
     B1      X, Y, Z:  212.0  97.9  49.09
2.4  Seg length ending at pt. 292 >= 6.0 stdevs above mean at 1.2062.  (no action taken)
     B1      X, Y, Z:  218.09  97.26  44.22
2.5  Seg length ending at pt. 1007 <= 0.1 at 0.0224.  (removed)
     A       X, Y, Z:  206.09  86.9  43.53
2.4  Seg length ending at pt. 1016 >= 6.0 stdevs above mean at 10.5528.  (no action taken)
     B1      X, Y, Z:  206.0  87.04  44.0
2.4  Seg length ending at pt. 1046 >= 6.0 stdevs above mean at 1.2827.  (no action taken)
     B1      X, Y, Z:  210.9  87.89  34.07
2.4  Seg length ending at pt. 1394 >= 6.0 stdevs above mean at 1.1371.  (no action taken)
     B1      X, Y, Z:  211.59  82.45  39.2
2.4  Seg length ending at pt. 2435 >= 6.0 stdevs above mean at 1.0941.  (no action taken)
     B1      X, Y, Z:  225.4  91.78  36.06
2.4  Seg length ending at pt. 2691 >= 6.0 stdevs above mean at 1.1309.  (no action taken)
     B1      X, Y, Z:  212.9  102.29  26.07
2.4  Seg length ending at pt. 2773 >= 6.0 stdevs above mean at 1.1656.  (no action taken)
     B1      X, Y, Z:  210.8  108.9  15.6
2.4  Seg length ending at pt. 3853 >= 6.0 stdevs above mean at 1.2104.  (no action taken)
     B1      X, Y, Z:  205.8  81.09  15.65
2.7  Line 1045 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  211.0  87.62  35.32
2.6  Line 1 and line 3 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  211.0  87.62  35.32
4.4  Line 1016 of rad 0.601 links to 1006 of rad 0.15.  (no action taken)
     B1      X, Y, Z:  206.0  87.04  44.0
 
 


Number of type A irregularities = 2
Number of type B1 irregularities = 19
Number of type B2 irregularities = 0
Number of type C irregularities = 0
