# Standardization file for C:\NMO_dev\data_proc\Temp_LMeasure\PVN7_microglia_27.swc.swc created with StdSwc version 1.31 on 10/13/20.
# Edited SWC file saved as C:\NMO_dev\data_proc\Temp_LMeasure\PVN7_microglia_27.swc.swc.CNG.swc.  See StdSwc1.31.doc for more information.
#
# code   irregularity_description. (action taken)
#     irregularity_type     coordinates
#
2.2  Line 1 is of type 3.  (no action taken)
     B1      X, Y, Z:  15.65  139.19  25.82
4.5  Radius of terminal line 7 at 3.5 >= 5.0 stdevs above the mean.  (no action taken)
     B1      X, Y, Z:  15.65  139.19  25.82
2.4  Seg length ending at pt. 944 >= 6.0 stdevs above mean at 1.4263.  (no action taken)
     B1      X, Y, Z:  14.73  139.4  25.53
2.4  Seg length ending at pt. 949 >= 6.0 stdevs above mean at 1.074.  (no action taken)
     B1      X, Y, Z:  13.99  139.69  28.1
2.5  Seg length ending at pt. 1201 <= 0.1 at 0.0995.  (removed)
     A       X, Y, Z:  31.57  139.32  49.54
2.5  Seg length ending at pt. 1790 <= 0.1 at 0.0954.  (removed)
     A       X, Y, Z:  15.46  170.59  27.82
2.7  Line 7 of rad 3.5 is an included side branch.  (removed)
     A      X, Y, Z:  15.65  139.19  25.82
2.6  Line 1 and line 4 have the same coordinates.  Parents do not match.  (no action taken)
     B1      X, Y, Z:  15.65  139.19  25.82
2.1  Line 1200 has 3 daughters.  Type is 3.  (no action taken)
     B1      X, Y, Z:  31.6  139.35  49.45
 
 


Number of type A irregularities = 3
Number of type B1 irregularities = 6
Number of type B2 irregularities = 0
Number of type C irregularities = 0
